C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: anterior pharynx defective 1b homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168309 Aph1b-002 ENSMUSG00000032375 10090 - 9:66775209-66795436 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000168309
Transcript ID Placenta Testis
ENSMUST00000168309 0.334±0.10 0.299±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098V CIL_00098V_0002 VISTA 9:66700483-67304558
CIL_00094O CIL_00094O_0002 VISTA 9:66740666-67343521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 IGI endopeptidase activity
GO:0005886 TAS plasma membrane
GO:0006508 IGI proteolysis
GO:0007219 IEA Notch signaling pathway
GO:0016021 IEA integral component of membrane
GO:0016485 IEA protein processing
GO:0043085 IEA positive regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261879 APH1B-001 protein_coding Homo_sapiens 0 573
ENST00000380340 APH1B-003 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000380343 APH1B-002 protein_coding Homo_sapiens 0 313
ENST00000558631 APH1B-007 retained_intron Homo_sapiens 0 191
ENST00000559823 APH1B-009 processed_transcript Homo_sapiens 5e-37 158
ENST00000559971 APH1B-004 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000560353 APH1B-005 protein_coding Homo_sapiens 0 564
ENST00000560716 APH1B-008 processed_transcript Homo_sapiens 0 339
ENST00000560890 APH1B-006 protein_coding Homo_sapiens 0 424

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