C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169695 Casc3-201 ENSMUSG00000078676 10090 + 11:98809808-98833806 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169695
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169695 13.806±3.32 21.807±3.51 12.544±1.55 22.517±8.77 13.480±6.49 15.770±2.62 6.183±1.98 9.966±1.08 8.911±3.27 19.286±0.98 6.720±0.50 14.570±4.39 10.095±1.58 13.914±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0002 VISTA 11:98447152-99051430
CIL_0002GG CIL_0002GG_0002 CGP 11:98767932-98807859
CIL_0007GO CIL_0007GO_0002 CGP 11:98795516-98833814
CIL_0002GI CIL_0002GI_0002 CGP 11:98804905-98853697

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006417 IEA regulation of translation
GO:0006950 IEA response to stress
GO:0008298 IDA intracellular mRNA localization
GO:0008380 IEA RNA splicing
GO:0030529 IDA ribonucleoprotein complex
GO:0042802 ISO identical protein binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264645 CASC3-001 protein_coding Homo_sapiens 0 2706
ENST00000394114 CASC3-005 retained_intron Homo_sapiens 0 483
ENST00000418132 CASC3-004 retained_intron Homo_sapiens 0 1698
ENST00000474190 CASC3-002 nonsense_mediated_decay Homo_sapiens 0 623
ENST00000577605 CASC3-008 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000579238 CASC3-011 retained_intron Homo_sapiens 0 296
ENST00000581849 CASC3-009 retained_intron Homo_sapiens 0 508
ENST00000583649 CASC3-006 retained_intron Homo_sapiens 0 318

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