C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418132 CASC3-004 ENSG00000108349 9606 + 17:40140318-40167080 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungOvaryENST00000418132
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Ovary
ENST00000418132 6.138±0.00 1.549±0.00 2.245±0.00 4.135±0.00 1.591±0.00 8.466±0.00 3.876±0.00 3.705±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873
CIL_0007GO CIL_0007GO_0001 CGP 17:40122298-40172183
CIL_0002GI CIL_0002GI_0001 CGP 17:40140318-40195656

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017384 Casc3-001 protein_coding Mus_musculus 0 1712
ENSMUST00000169695 Casc3-201 protein_coding Mus_musculus 0 1698
ENSMUST00000147065 Casc3-003 processed_transcript Mus_musculus 0 547

Loading