C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cancer susceptibility candidate 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000078676 Casc3 10090 + 11:98804905-98833814 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017384 Casc3-001 98804905-98833814 protein_coding
  ENSMUST00000144220 Casc3-002 98810150-98810928 processed_transcript
  ENSMUST00000147065 Casc3-003 98810161-98822537 processed_transcript
  ENSMUST00000169695 Casc3-201 98809808-98833806 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017384ENSMUST00000169695
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017384 N/A N/A N/A N/A N/A N/A N/A N/A 4.405±0.00 N/A N/A N/A N/A N/A
ENSMUST00000169695 13.806±3.32 21.807±3.51 12.544±1.55 22.517±8.77 13.480±6.49 15.770±2.62 6.183±1.98 9.966±1.08 8.911±3.27 19.286±0.98 6.720±0.50 14.570±4.39 10.095±1.58 13.914±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0002 VISTA 11:98447152-99051430
CIL_0002GG CIL_0002GG_0002 CGP 11:98767932-98807859
CIL_0007GO CIL_0007GO_0002 CGP 11:98795516-98833814
CIL_0002GI CIL_0002GI_0002 CGP 11:98804905-98853697

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006417 IEA regulation of translation
GO:0006950 IEA response to stress
GO:0008298 IDA intracellular mRNA localization
GO:0008380 IEA RNA splicing
GO:0019899 IEA enzyme binding
GO:0030529 IDA ribonucleoprotein complex
GO:0031625 IEA ubiquitin protein ligase binding
GO:0035145 IEA exon-exon junction complex
GO:0042802 ISO identical protein binding
GO:0044822 IEA poly(A) RNA binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029911 casc3 cancer susceptibility candidate 3 protein_coding Danio_rerio
ENSG00000108349 CASC3 cancer susceptibility candidate 3 protein_coding Homo_sapiens

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