C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TraB domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395829 TRABD-005 ENSG00000170638 9606 + 22:50193014-50199569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395829
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395829 8.558±0.00 0.132±0.00 2.007±0.00 4.640±0.00 2.564±2.12 1.330±0.00 8.503±0.00 0.902±0.39 7.964±0.00 1.242±0.00 25.448±26.09 5.788±2.78 10.248±5.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GZ CIL_0000GZ_0001 CGP 22:50170731-50199598
CIL_000098 CIL_000098_0001 CGP 22:50185915-50217616

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165690 Trabd-004 protein_coding Mus_musculus 0 1232
ENSMUST00000081702 Trabd-001 protein_coding Mus_musculus 0 1232
ENSMUST00000169891 Trabd-003 protein_coding Mus_musculus 0 1182
ENSMUST00000169870 Trabd-002 nonsense_mediated_decay Mus_musculus 0 1160
ENSMUST00000170754 Trabd-005 retained_intron Mus_musculus 0 353
ENSMUST00000163696 Trabd-007 retained_intron Mus_musculus 0 327

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