C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171583 Galnt1-006 ENSMUSG00000000420 10090 + 18:24238323-24267667 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FM CIL_0002FM_0003 CGP 18:24104757-24286818
CIL_00002F CIL_00002F_0002 CGP 18:24205344-24477765

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0006493 IDA protein O-linked glycosylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269195 GALNT1-001 protein_coding Homo_sapiens 0 721
ENST00000589189 GALNT1-004 nonsense_mediated_decay Homo_sapiens 0 721
ENST00000590654 GALNT1-003 nonsense_mediated_decay Homo_sapiens 0 721
ENST00000591081 GALNT1-002 protein_coding Homo_sapiens 0 248
ENST00000591924 GALNT1-006 protein_coding Homo_sapiens 0 248

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