C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypeptide N-acetylgalactosaminyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000269195 GALNT1-001 ENSG00000141429 9606 + 18:35654560-35711834 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269195
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269195 1.989±0.00 14.782±0.00 4.593±0.41 10.424±4.03 10.992±0.38 2.136±0.00 5.756±0.18 7.581±0.64 8.999±0.33 3.238±0.78 8.005±1.96 11.268±4.49 7.908±3.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FM CIL_0002FM_0002 CGP 18:35452230-35711834
CIL_00002F CIL_00002F_0001 CGP 18:35581117-35979286

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005576 IEA extracellular region
GO:0005794 IDA Golgi apparatus
GO:0006493 ISS protein O-linked glycosylation
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0018242 IDA protein O-linked glycosylation via serine
GO:0018243 IDA protein O-linked glycosylation via threonine
GO:0030145 IDA manganese ion binding
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178605 Galnt1-201 protein_coding Mus_musculus 0 2939
ENSMUST00000170243 Galnt1-002 protein_coding Mus_musculus 0 2939
ENSMUST00000000430 Galnt1-001 protein_coding Mus_musculus 0 2939
ENSDART00000087368 galnt1-201 protein_coding Danio_rerio 0 1029
ENSDART00000140673 galnt1-001 protein_coding Danio_rerio 0 1029
ENSMUST00000164066 Galnt1-007 nonsense_mediated_decay Mus_musculus 0 815
ENSMUST00000164998 Galnt1-003 protein_coding Mus_musculus 0 806
ENSMUST00000171583 Galnt1-006 nonsense_mediated_decay Mus_musculus 0 721
ENSMUST00000169474 Galnt1-005 processed_transcript Mus_musculus 0 272
ENSMUST00000170191 Galnt1-004 processed_transcript Mus_musculus 0 224

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