C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000420 Galnt1 10090 + 18:24205344-24286818 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000430 Galnt1-001 24205344-24286818 protein_coding
  ENSMUST00000164066 Galnt1-007 24246086-24271669 nonsense_mediated_decay
  ENSMUST00000164998 Galnt1-003 24205959-24254630 protein_coding
  ENSMUST00000169474 Galnt1-005 24279995-24282871 processed_transcript
  ENSMUST00000170191 Galnt1-004 24280033-24283191 processed_transcript
  ENSMUST00000170243 Galnt1-002 24205767-24286810 protein_coding
  ENSMUST00000171583 Galnt1-006 24238323-24267667 nonsense_mediated_decay
  ENSMUST00000178605 Galnt1-201 24232597-24286810 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000430ENSMUST00000164066ENSMUST00000170243ENSMUST00000178605
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000430 3.576±0.07 8.890±3.18 N/A 0.697±0.00 5.304±2.15 N/A 2.156±0.00 N/A N/A 3.630±0.00 N/A 12.575±5.34 N/A N/A
ENSMUST00000164066 N/A N/A N/A 9.422±0.00 N/A N/A N/A N/A N/A N/A N/A 25.084±0.00 60.073±0.00 10.713±0.00
ENSMUST00000170243 3.449±0.00 N/A N/A 3.241±0.00 N/A 4.096±1.89 3.274±1.36 3.740±0.62 1.264±0.08 N/A 2.648±0.40 4.226±1.00 12.016±0.00 1.470±0.40
ENSMUST00000178605 16.368±0.65 7.214±3.60 18.323±0.19 9.944±6.21 20.061±2.64 10.042±3.35 11.834±1.89 17.763±1.64 18.024±9.89 17.527±2.07 16.462±2.09 14.656±8.28 20.075±8.75 4.395±0.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FM CIL_0002FM_0003 CGP 18:24104757-24286818
CIL_00002F CIL_00002F_0002 CGP 18:24205344-24477765

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005576 IEA extracellular region
GO:0005794 IEA Golgi apparatus
GO:0006493 IDA protein O-linked glycosylation
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0018242 IEA protein O-linked glycosylation via serine
GO:0018243 IEA protein O-linked glycosylation via threonine
GO:0030145 ISS manganese ion binding
GO:0030246 IEA carbohydrate binding
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061335 galnt1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 protein_coding Danio_rerio
ENSG00000141429 GALNT1 polypeptide N-acetylgalactosaminyltransferase 1 protein_coding Homo_sapiens

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