C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00002F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141429-ENSG00000141428 CGP 9606 18:35581117-35979286
GeneTranscriptPositionBiotype
ENSG00000141428 (C18orf21)
chromosome 18 open reading frame 21 		ENST00000269194 (C18orf21-004) 35972634-35978939 protein_coding
ENST00000333234 (C18orf21-002) 35972785-35979278 protein_coding
ENST00000587719 (C18orf21-003) 35972681-35973340 retained_intron
ENST00000587873 (C18orf21-005) 35972682-35978873 protein_coding
ENST00000592875 (C18orf21-001) 35972083-35979278 protein_coding
ENST00000593210 (C18orf21-006) 35972713-35973648 processed_transcript
ENST00000610527 (C18orf21-201) 35972625-35979286 protein_coding
ENST00000618334 (C18orf21-202) 35972625-35979286 protein_coding
ENSG00000141429 (GALNT1)
polypeptide N-acetylgalactosaminyltransferase 1 		ENST00000269195 (GALNT1-001) 35654560-35711834 protein_coding
ENST00000586725 (GALNT1-005) 35581117-35654593 processed_transcript
ENST00000589189 (GALNT1-004) 35627429-35710292 nonsense_mediated_decay
ENST00000590654 (GALNT1-003) 35654656-35709780 nonsense_mediated_decay
ENST00000591081 (GALNT1-002) 35654572-35664517 protein_coding
ENST00000591924 (GALNT1-006) 35581740-35663804 protein_coding
ENSG00000266965 (RP11-712P20.2)
 ENST00000593078 (RP11-712P20.2-001) 35595901-35597599 sense_intronic
ENSG00000267397 (RP11-873E20.1)
 ENST00000590983 (RP11-873E20.1-001) 35716370-35717978 lincRNA
ENSG00000267627 (RP11-905K4.1)
 ENST00000586982 (RP11-905K4.1-002) 35951803-35965840 lincRNA
ENST00000589074 (RP11-905K4.1-001) 35951803-35966118 lincRNA
ENSG00000267797 (NRBF2P1)
nuclear receptor binding factor 2 pseudogene 1 		ENST00000587407 (NRBF2P1-001) 35841759-35842617 processed_pseudogene
ENSG00000278986 (RP11-723J4.3)
 ENST00000623524 (RP11-723J4.3-001) 35972151-35973916 TEC
CIL_00002F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000420-ENSMUSG00000024273 CGP 10090 18:24205344-24477765
GeneTranscriptPositionBiotype
ENSMUSG00000000420 (Galnt1)
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 		ENSMUST00000000430 (Galnt1-001) 24205344-24286818 protein_coding
ENSMUST00000164066 (Galnt1-007) 24246086-24271669 nonsense_mediated_decay
ENSMUST00000164998 (Galnt1-003) 24205959-24254630 protein_coding
ENSMUST00000169474 (Galnt1-005) 24279995-24282871 processed_transcript
ENSMUST00000170191 (Galnt1-004) 24280033-24283191 processed_transcript
ENSMUST00000170243 (Galnt1-002) 24205767-24286810 protein_coding
ENSMUST00000171583 (Galnt1-006) 24238323-24267667 nonsense_mediated_decay
ENSMUST00000178605 (Galnt1-201) 24232597-24286810 protein_coding
ENSMUSG00000024273 (2700062C07Rik)
RIKEN cDNA 2700062C07 gene 		ENSMUST00000097646 (2700062C07Rik-201) 24470861-24477765 protein_coding
ENSMUSG00000091363 (Gm7701)
predicted gene 7701 		ENSMUST00000163185 (Gm7701-001) 24257378-24258856 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00002F_0001ENSG00000141428ENST00000269194ENST00000333234ENST00000587719ENST00000587873ENST00000592875ENST00000593210ENST00000610527ENST00000618334ENSG00000141429ENST00000269195ENST00000586725ENST00000589189ENST00000590654ENST00000591081ENST00000591924ENSG00000266965ENST00000593078ENSG00000267397ENST00000590983ENSG00000267627ENST00000586982ENST00000589074ENSG00000267797ENST00000587407ENSG00000278986ENST00000623524CIL_00002F_0002ENSMUSG00000000420ENSMUST00000000430ENSMUST00000164066ENSMUST00000164998ENSMUST00000169474ENSMUST00000170191ENSMUST00000170243ENSMUST00000171583ENSMUST00000178605ENSMUSG00000024273ENSMUST00000097646ENSMUSG00000091363ENSMUST00000163185
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00002F_0001ENSG00000141428ENST00000269194ENST00000333234ENST00000587873ENST00000592875ENST00000610527ENST00000618334ENSG00000141429ENST00000269195ENST00000589189ENST00000590654ENSG00000266965ENST00000593078ENSG00000267397ENST00000590983ENSG00000267627ENST00000586982ENST00000589074ENSG00000267797ENST00000587407ENSG00000278986ENST00000623524CIL_00002F_0002ENSMUSG00000000420ENSMUST00000000430ENSMUST00000164066ENSMUST00000170243ENSMUST00000178605ENSMUSG00000024273ENSMUST00000097646ENSMUSG00000091363ENSMUST00000163185
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141428 ENST00000269194 1.307±0.00 5.578±0.00 N/A 3.096±0.00 2.448±0.00 N/A 4.084±0.00 4.814±0.00 3.911±0.00 3.529±0.00 9.573±0.00 3.588±1.35 6.228±0.00 18.506±2.86
ENST00000333234 N/A 4.132±0.00 0.488±0.00 1.802±0.54 1.427±0.28 1.874±0.00 1.042±0.56 2.131±0.00 0.655±0.11 0.450±0.00 N/A 2.576±2.23 2.572±0.81 3.073±0.00
ENST00000587719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587873 2.393±0.00 N/A N/A N/A N/A 3.189±0.00 N/A N/A 0.504±0.00 N/A 0.632±0.00 N/A N/A N/A
ENST00000592875 N/A N/A N/A N/A N/A 0.649±0.00 0.468±0.00 0.783±0.00 0.150±0.00 0.251±0.00 1.184±0.00 1.141±0.15 1.552±0.20 N/A
ENST00000593210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610527 1.336±0.00 N/A N/A 2.000±0.00 1.572±0.00 1.752±0.00 N/A N/A 0.273±0.00 N/A N/A 2.709±0.00 N/A 6.516±0.00
ENST00000618334 0.779±0.00 N/A N/A N/A 1.361±0.32 1.305±0.00 0.673±0.00 1.327±0.00 1.455±0.00 1.567±0.24 4.841±0.00 N/A N/A 3.895±0.00
ENSG00000141429 ENST00000269195 1.989±0.00 14.782±0.00 N/A 4.593±0.41 10.424±4.03 10.992±0.38 2.136±0.00 5.756±0.18 7.581±0.64 8.999±0.33 3.238±0.78 8.005±1.96 11.268±4.49 7.908±3.33
ENST00000586725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589189 N/A N/A 2.278±0.00 N/A 4.690±0.00 4.255±0.00 0.750±0.00 N/A 4.320±0.00 N/A 3.175±0.00 4.864±0.00 N/A N/A
ENST00000590654 5.121±0.00 N/A 0.817±0.00 2.445±0.00 3.959±1.81 3.969±0.00 4.306±1.36 N/A N/A N/A 1.555±0.00 4.268±1.16 N/A N/A
ENST00000591081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000266965 ENST00000593078 N/A 0.273±0.00 0.084±0.00 0.120±0.08 0.156±0.10 0.214±0.00 0.067±0.02 0.223±0.21 0.163±0.00 0.560±0.00 N/A 0.172±0.17 0.014±0.00 0.057±0.05
ENSG00000267397 ENST00000590983 0.140±0.00 0.641±0.00 N/A 0.121±0.09 0.137±0.04 0.028±0.01 0.047±0.00 0.029±0.00 0.075±0.04 0.030±0.00 0.217±0.00 0.085±0.03 0.060±0.04 0.038±0.03
ENSG00000267627 ENST00000586982 0.130±0.00 0.516±0.00 N/A 0.376±0.00 0.305±0.00 0.273±0.00 0.083±0.00 0.431±0.00 0.081±0.00 0.132±0.00 N/A 0.156±0.00 0.136±0.00 0.263±0.00
ENST00000589074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.145±0.41
ENSG00000267797 ENST00000587407 N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.143±0.00 N/A N/A N/A 0.033±0.00 N/A N/A
ENSG00000278986 ENST00000623524 N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.00 0.166±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000420 ENSMUST00000000430 3.576±0.07 8.890±3.18 N/A 0.697±0.00 5.304±2.15 N/A 2.156±0.00 N/A N/A 3.630±0.00 N/A 12.575±5.34 N/A N/A
ENSMUST00000164066 N/A N/A N/A 9.422±0.00 N/A N/A N/A N/A N/A N/A N/A 25.084±0.00 60.073±0.00 10.713±0.00
ENSMUST00000164998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170243 3.449±0.00 N/A N/A 3.241±0.00 N/A 4.096±1.89 3.274±1.36 3.740±0.62 1.264±0.08 N/A 2.648±0.40 4.226±1.00 12.016±0.00 1.470±0.40
ENSMUST00000171583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178605 16.368±0.65 7.214±3.60 18.323±0.19 9.944±6.21 20.061±2.64 10.042±3.35 11.834±1.89 17.763±1.64 18.024±9.89 17.527±2.07 16.462±2.09 14.656±8.28 20.075±8.75 4.395±0.92
ENSMUSG00000024273 ENSMUST00000097646 6.989±0.87 5.034±1.17 10.066±0.05 9.211±2.47 4.016±1.00 3.858±0.78 1.693±0.32 5.088±1.84 5.169±3.02 4.168±0.74 1.304±0.37 7.837±1.96 11.563±2.99 6.800±3.35
ENSMUSG00000091363 ENSMUST00000163185 0.282±0.12 0.146±0.11 0.056±0.04 0.147±0.01 0.187±0.05 0.246±0.07 0.081±0.02 0.087±0.03 0.130±0.07 0.361±0.09 0.033±0.01 0.227±0.11 0.082±0.05 0.046±0.02

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