C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00002F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141429-ENSG00000141428 CGP 9606 18:35581117-35979286
GeneTranscriptPositionBiotype
ENSG00000141428 (C18orf21)
chromosome 18 open reading frame 21 		ENST00000269194 (C18orf21-004) 35972634-35978939 protein_coding
ENST00000333234 (C18orf21-002) 35972785-35979278 protein_coding
ENST00000587719 (C18orf21-003) 35972681-35973340 retained_intron
ENST00000587873 (C18orf21-005) 35972682-35978873 protein_coding
ENST00000592875 (C18orf21-001) 35972083-35979278 protein_coding
ENST00000593210 (C18orf21-006) 35972713-35973648 processed_transcript
ENST00000610527 (C18orf21-201) 35972625-35979286 protein_coding
ENST00000618334 (C18orf21-202) 35972625-35979286 protein_coding
ENSG00000141429 (GALNT1)
polypeptide N-acetylgalactosaminyltransferase 1 		ENST00000269195 (GALNT1-001) 35654560-35711834 protein_coding
ENST00000586725 (GALNT1-005) 35581117-35654593 processed_transcript
ENST00000589189 (GALNT1-004) 35627429-35710292 nonsense_mediated_decay
ENST00000590654 (GALNT1-003) 35654656-35709780 nonsense_mediated_decay
ENST00000591081 (GALNT1-002) 35654572-35664517 protein_coding
ENST00000591924 (GALNT1-006) 35581740-35663804 protein_coding
ENSG00000266965 (RP11-712P20.2)
 ENST00000593078 (RP11-712P20.2-001) 35595901-35597599 sense_intronic
ENSG00000267397 (RP11-873E20.1)
 ENST00000590983 (RP11-873E20.1-001) 35716370-35717978 lincRNA
ENSG00000267627 (RP11-905K4.1)
 ENST00000586982 (RP11-905K4.1-002) 35951803-35965840 lincRNA
ENST00000589074 (RP11-905K4.1-001) 35951803-35966118 lincRNA
ENSG00000267797 (NRBF2P1)
nuclear receptor binding factor 2 pseudogene 1 		ENST00000587407 (NRBF2P1-001) 35841759-35842617 processed_pseudogene
ENSG00000278986 (RP11-723J4.3)
 ENST00000623524 (RP11-723J4.3-001) 35972151-35973916 TEC

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_00002F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000420-ENSMUSG00000024273 CGP 10090 18:24205344-24477765
GeneTranscriptPositionBiotype
ENSMUSG00000000420 (Galnt1)
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 		ENSMUST00000000430 (Galnt1-001) 24205344-24286818 protein_coding
ENSMUST00000164066 (Galnt1-007) 24246086-24271669 nonsense_mediated_decay
ENSMUST00000164998 (Galnt1-003) 24205959-24254630 protein_coding
ENSMUST00000169474 (Galnt1-005) 24279995-24282871 processed_transcript
ENSMUST00000170191 (Galnt1-004) 24280033-24283191 processed_transcript
ENSMUST00000170243 (Galnt1-002) 24205767-24286810 protein_coding
ENSMUST00000171583 (Galnt1-006) 24238323-24267667 nonsense_mediated_decay
ENSMUST00000178605 (Galnt1-201) 24232597-24286810 protein_coding
ENSMUSG00000024273 (2700062C07Rik)
RIKEN cDNA 2700062C07 gene 		ENSMUST00000097646 (2700062C07Rik-201) 24470861-24477765 protein_coding
ENSMUSG00000091363 (Gm7701)
predicted gene 7701 		ENSMUST00000163185 (Gm7701-001) 24257378-24258856 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00002F_0001ENSG00000141428ENST00000269194ENST00000333234ENST00000587719ENST00000587873ENST00000592875ENST00000593210ENST00000610527ENST00000618334ENSG00000141429ENST00000269195ENST00000586725ENST00000589189ENST00000590654ENST00000591081ENST00000591924ENSG00000266965ENST00000593078ENSG00000267397ENST00000590983ENSG00000267627ENST00000586982ENST00000589074ENSG00000267797ENST00000587407ENSG00000278986ENST00000623524CIL_00002F_0002ENSMUSG00000000420ENSMUST00000000430ENSMUST00000164066ENSMUST00000164998ENSMUST00000169474ENSMUST00000170191ENSMUST00000170243ENSMUST00000171583ENSMUST00000178605ENSMUSG00000024273ENSMUST00000097646ENSMUSG00000091363ENSMUST00000163185
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00002F_0001ENSG00000141428ENST00000269194ENST00000333234ENST00000587873ENST00000592875ENST00000610527ENST00000618334ENSG00000141429ENST00000269195ENST00000589189ENST00000590654ENSG00000266965ENST00000593078ENSG00000267397ENST00000590983ENSG00000267627ENST00000586982ENST00000589074ENSG00000267797ENST00000587407ENSG00000278986ENST00000623524CIL_00002F_0002ENSMUSG00000000420ENSMUST00000000430ENSMUST00000164066ENSMUST00000170243ENSMUST00000178605ENSMUSG00000024273ENSMUST00000097646ENSMUSG00000091363ENSMUST00000163185
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141428 ENST00000269194 1.307±0.00 5.578±0.00 N/A 3.096±0.00 2.448±0.00 N/A 4.084±0.00 4.814±0.00 3.911±0.00 3.529±0.00 9.573±0.00 3.588±1.35 6.228±0.00 18.506±2.86
ENST00000333234 N/A 4.132±0.00 0.488±0.00 1.802±0.54 1.427±0.28 1.874±0.00 1.042±0.56 2.131±0.00 0.655±0.11 0.450±0.00 N/A 2.576±2.23 2.572±0.81 3.073±0.00
ENST00000587719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587873 2.393±0.00 N/A N/A N/A N/A 3.189±0.00 N/A N/A 0.504±0.00 N/A 0.632±0.00 N/A N/A N/A
ENST00000592875 N/A N/A N/A N/A N/A 0.649±0.00 0.468±0.00 0.783±0.00 0.150±0.00 0.251±0.00 1.184±0.00 1.141±0.15 1.552±0.20 N/A
ENST00000593210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610527 1.336±0.00 N/A N/A 2.000±0.00 1.572±0.00 1.752±0.00 N/A N/A 0.273±0.00 N/A N/A 2.709±0.00 N/A 6.516±0.00
ENST00000618334 0.779±0.00 N/A N/A N/A 1.361±0.32 1.305±0.00 0.673±0.00 1.327±0.00 1.455±0.00 1.567±0.24 4.841±0.00 N/A N/A 3.895±0.00
ENSG00000141429 ENST00000269195 1.989±0.00 14.782±0.00 N/A 4.593±0.41 10.424±4.03 10.992±0.38 2.136±0.00 5.756±0.18 7.581±0.64 8.999±0.33 3.238±0.78 8.005±1.96 11.268±4.49 7.908±3.33
ENST00000586725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589189 N/A N/A 2.278±0.00 N/A 4.690±0.00 4.255±0.00 0.750±0.00 N/A 4.320±0.00 N/A 3.175±0.00 4.864±0.00 N/A N/A
ENST00000590654 5.121±0.00 N/A 0.817±0.00 2.445±0.00 3.959±1.81 3.969±0.00 4.306±1.36 N/A N/A N/A 1.555±0.00 4.268±1.16 N/A N/A
ENST00000591081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000266965 ENST00000593078 N/A 0.273±0.00 0.084±0.00 0.120±0.08 0.156±0.10 0.214±0.00 0.067±0.02 0.223±0.21 0.163±0.00 0.560±0.00 N/A 0.172±0.17 0.014±0.00 0.057±0.05
ENSG00000267397 ENST00000590983 0.140±0.00 0.641±0.00 N/A 0.121±0.09 0.137±0.04 0.028±0.01 0.047±0.00 0.029±0.00 0.075±0.04 0.030±0.00 0.217±0.00 0.085±0.03 0.060±0.04 0.038±0.03
ENSG00000267627 ENST00000586982 0.130±0.00 0.516±0.00 N/A 0.376±0.00 0.305±0.00 0.273±0.00 0.083±0.00 0.431±0.00 0.081±0.00 0.132±0.00 N/A 0.156±0.00 0.136±0.00 0.263±0.00
ENST00000589074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.145±0.41
ENSG00000267797 ENST00000587407 N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.143±0.00 N/A N/A N/A 0.033±0.00 N/A N/A
ENSG00000278986 ENST00000623524 N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.00 0.166±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000420 ENSMUST00000000430 3.576±0.07 8.890±3.18 N/A 0.697±0.00 5.304±2.15 N/A 2.156±0.00 N/A N/A 3.630±0.00 N/A 12.575±5.34 N/A N/A
ENSMUST00000164066 N/A N/A N/A 9.422±0.00 N/A N/A N/A N/A N/A N/A N/A 25.084±0.00 60.073±0.00 10.713±0.00
ENSMUST00000164998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170243 3.449±0.00 N/A N/A 3.241±0.00 N/A 4.096±1.89 3.274±1.36 3.740±0.62 1.264±0.08 N/A 2.648±0.40 4.226±1.00 12.016±0.00 1.470±0.40
ENSMUST00000171583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178605 16.368±0.65 7.214±3.60 18.323±0.19 9.944±6.21 20.061±2.64 10.042±3.35 11.834±1.89 17.763±1.64 18.024±9.89 17.527±2.07 16.462±2.09 14.656±8.28 20.075±8.75 4.395±0.92
ENSMUSG00000024273 ENSMUST00000097646 6.989±0.87 5.034±1.17 10.066±0.05 9.211±2.47 4.016±1.00 3.858±0.78 1.693±0.32 5.088±1.84 5.169±3.02 4.168±0.74 1.304±0.37 7.837±1.96 11.563±2.99 6.800±3.35
ENSMUSG00000091363 ENSMUST00000163185 0.282±0.12 0.146±0.11 0.056±0.04 0.147±0.01 0.187±0.05 0.246±0.07 0.081±0.02 0.087±0.03 0.130±0.07 0.361±0.09 0.033±0.01 0.227±0.11 0.082±0.05 0.046±0.02

Loading