C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypeptide N-acetylgalactosaminyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000590654 GALNT1-003 ENSG00000141429 9606 + 18:35654656-35709780 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartMuscleOvaryENST00000590654
Transcript ID Adipose Bladder Brain Breast Colon Heart Muscle Ovary
ENST00000590654 5.121±0.00 0.817±0.00 2.445±0.00 3.959±1.81 3.969±0.00 4.306±1.36 1.555±0.00 4.268±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FM CIL_0002FM_0002 CGP 18:35452230-35711834
CIL_00002F CIL_00002F_0001 CGP 18:35581117-35979286

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178605 Galnt1-201 protein_coding Mus_musculus 0 2324
ENSMUST00000170243 Galnt1-002 protein_coding Mus_musculus 0 2324
ENSMUST00000000430 Galnt1-001 protein_coding Mus_musculus 0 2324
ENSDART00000087368 galnt1-201 protein_coding Danio_rerio 0 970
ENSDART00000140673 galnt1-001 protein_coding Danio_rerio 0 970
ENSMUST00000164066 Galnt1-007 nonsense_mediated_decay Mus_musculus 0 815
ENSMUST00000171583 Galnt1-006 nonsense_mediated_decay Mus_musculus 0 721
ENSMUST00000164998 Galnt1-003 protein_coding Mus_musculus 0 468
ENSMUST00000169474 Galnt1-005 processed_transcript Mus_musculus 0 272
ENSMUST00000170191 Galnt1-004 processed_transcript Mus_musculus 0 224

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