C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypeptide N-acetylgalactosaminyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000591924 GALNT1-006 ENSG00000141429 9606 + 18:35581740-35663804 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FM CIL_0002FM_0002 CGP 18:35452230-35711834
CIL_00002F CIL_00002F_0001 CGP 18:35581117-35979286

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005576 IEA extracellular region
GO:0005794 IDA Golgi apparatus
GO:0006493 ISS protein O-linked glycosylation
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0018242 IDA protein O-linked glycosylation via serine
GO:0018243 IDA protein O-linked glycosylation via threonine
GO:0030145 IDA manganese ion binding
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178605 Galnt1-201 protein_coding Mus_musculus 0 617
ENSMUST00000164998 Galnt1-003 protein_coding Mus_musculus 0 617
ENSMUST00000170243 Galnt1-002 protein_coding Mus_musculus 0 617
ENSMUST00000000430 Galnt1-001 protein_coding Mus_musculus 0 617
ENSMUST00000171583 Galnt1-006 nonsense_mediated_decay Mus_musculus 0 248
ENSMUST00000164066 Galnt1-007 nonsense_mediated_decay Mus_musculus 0 230

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