C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171637 Abca7-202 ENSMUSG00000035722 10090 + 10:79997576-80015553 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171637
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171637 2.725±0.57 4.397±1.79 1.314±0.59 3.598±0.44 4.747±1.67 0.777±0.12 1.060±0.15 1.530±1.20 5.218±0.56 0.866±0.25 3.042±1.02 2.065±1.10 0.273±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0000I2 CIL_0000I2_0002 CGP 10:79988584-80015572
CIL_0000HU CIL_0000HU_0002 CGP 10:79996494-80031472

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005548 IDA phospholipid transporter activity
GO:0005622 IDA intracellular
GO:0006200 IEA ATP catabolic process
GO:0016324 IDA apical plasma membrane
GO:0033700 IDA phospholipid efflux

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000136772 abca4a-002 protein_coding Danio_rerio 0.000000004 69
ENST00000263094 ABCA7-201 protein_coding Homo_sapiens 0 1984
ENST00000265662 ABCA2-201 protein_coding Homo_sapiens 7e-38 165
ENST00000341511 ABCA2-002 protein_coding Homo_sapiens 7e-38 165
ENST00000371605 ABCA2-202 protein_coding Homo_sapiens 7e-38 165
ENST00000433129 ABCA7-001 protein_coding Homo_sapiens 0 1984
ENST00000435683 ABCA7-002 protein_coding Homo_sapiens 0 1984
ENST00000437791 ABCA2-006 processed_transcript Homo_sapiens 3e-37 159
ENST00000459850 ABCA2-013 retained_intron Homo_sapiens 7e-38 165
ENST00000463603 ABCA2-008 retained_intron Homo_sapiens 5e-39 165
ENST00000479446 ABCA2-009 nonsense_mediated_decay Homo_sapiens 5e-38 165
ENST00000487109 ABCA2-016 nonsense_mediated_decay Homo_sapiens 6e-38 165
ENST00000532194 ABCA7-014 retained_intron Homo_sapiens 0 656
ENST00000614293 ABCA2-203 protein_coding Homo_sapiens 7e-38 165

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