C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel modifier 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172572 Scnm1-001 ENSMUSG00000092607 10090 - 3:95129536-95134011 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172572
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172572 8.473±0.77 4.714±0.78 7.832±0.95 7.564±1.81 8.065±1.40 9.824±0.67 11.416±3.17 15.893±2.49 10.534±5.47 9.330±1.13 9.832±0.87 9.916±1.81 11.153±3.15 9.937±1.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MO CIL_0003MO_0002 CGP 3:95124476-95134011
CIL_0000UG CIL_0000UG_0003 CGP 3:95129536-95139518

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IMP RNA splicing
GO:0019899 IEA enzyme binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368902 SCNM1-004 protein_coding Homo_sapiens 0 638
ENST00000368905 SCNM1-001 protein_coding Homo_sapiens 0 754
ENST00000459799 SCNM1-005 processed_transcript Homo_sapiens 0 279
ENST00000461862 SCNM1-002 processed_transcript Homo_sapiens 0 449
ENST00000497147 SCNM1-006 processed_transcript Homo_sapiens 0 568
ENST00000602841 SCNM1-007 protein_coding Homo_sapiens 0 638

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