C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel modifier 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000602841 SCNM1-007 ENSG00000163156 9606 + 1:151156664-151169133 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000602841
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000602841 14.281±0.00 35.638±0.00 17.392±0.00 9.796±4.41 9.328±4.78 18.252±0.00 7.259±0.00 10.572±6.91 23.785±0.00 24.954±3.96 26.704±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UG CIL_0000UG_0002 CGP 1:151156664-151170297

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006397 IEA mRNA processing
GO:0019899 IPI enzyme binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172572 Scnm1-001 protein_coding Mus_musculus 0 638
ENSMUST00000173462 Scnm1-003 protein_coding Mus_musculus 0 363
ENSMUST00000173527 Scnm1-005 retained_intron Mus_musculus 0 353
ENSMUST00000174835 Scnm1-007 processed_transcript Mus_musculus 0 283
ENSMUST00000174508 Scnm1-008 retained_intron Mus_musculus 0 281
ENSMUST00000174859 Scnm1-004 retained_intron Mus_musculus 0 261

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