C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sodium channel modifier 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000092607 Scnm1 10090 - 3:95129536-95134011 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000172572 Scnm1-001 95129536-95134011 protein_coding
  ENSMUST00000173462 Scnm1-003 95129729-95134011 protein_coding
  ENSMUST00000173527 Scnm1-005 95130293-95133939 retained_intron
  ENSMUST00000174508 Scnm1-008 95129719-95130684 retained_intron
  ENSMUST00000174835 Scnm1-007 95129726-95131266 processed_transcript
  ENSMUST00000174859 Scnm1-004 95129720-95133773 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172572ENSMUST00000173462ENSMUST00000173527ENSMUST00000174508ENSMUST00000174835
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172572 8.473±0.77 4.714±0.78 7.832±0.95 7.564±1.81 8.065±1.40 9.824±0.67 11.416±3.17 15.893±2.49 10.534±5.47 9.330±1.13 9.832±0.87 9.916±1.81 11.153±3.15 9.937±1.13
ENSMUST00000173462 5.539±0.42 N/A 10.432±1.87 8.229±2.07 N/A N/A 10.831±1.14 4.777±0.00 10.347±3.90 5.963±0.83 6.266±1.66 9.412±2.12 9.827±3.92 12.353±1.85
ENSMUST00000173527 3.973±0.39 2.372±0.00 6.419±0.00 6.603±1.72 4.109±0.63 3.639±0.71 4.148±0.85 N/A 3.573±0.98 3.951±0.84 N/A 6.104±1.85 7.809±0.03 2.803±0.00
ENSMUST00000174508 4.844±0.67 3.082±0.58 N/A 5.107±1.07 6.001±2.65 3.922±0.74 N/A 5.381±0.81 2.138±0.00 3.725±0.28 2.982±0.00 5.770±1.16 N/A N/A
ENSMUST00000174835 N/A 3.213±0.00 N/A 14.330±0.00 N/A N/A N/A N/A N/A N/A 7.796±0.00 16.227±2.28 14.033±0.40 6.712±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MO CIL_0003MO_0002 CGP 3:95124476-95134011
CIL_0000UG CIL_0000UG_0003 CGP 3:95129536-95139518

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IMP RNA splicing
GO:0019899 IEA enzyme binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003027 scnm1 sodium channel modifier 1 protein_coding Danio_rerio
ENSG00000163156 SCNM1 sodium channel modifier 1 protein_coding Homo_sapiens

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