C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre B cell leukemia homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173328 Pbx2-002 ENSMUSG00000034673 10090 + 17:34591266-34596607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000173328
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000173328 6.955±1.87 5.339±0.05 16.096±4.06 6.449±1.31 6.673±0.84 3.828±1.18 6.811±2.01 5.186±2.67 12.546±2.38 2.228±0.78 7.062±2.61 13.467±7.68 2.058±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RT CIL_0002RT_0002 CGP 17:34589806-34597400

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0009954 IGI proximal/distal pattern formation
GO:0030326 IGI embryonic limb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375050 PBX2-001 protein_coding Homo_sapiens 0 1495
ENST00000383270 PBX2-001 protein_coding Homo_sapiens 0 1495
ENST00000420432 PBX2-001 protein_coding Homo_sapiens 0 1495
ENST00000431537 PBX2-001 protein_coding Homo_sapiens 0 1495
ENST00000433552 PBX2-001 protein_coding Homo_sapiens 0 1495
ENST00000453487 PBX2-001 protein_coding Homo_sapiens 0 1495
ENST00000453961 PBX2-001 protein_coding Homo_sapiens 0 1495
ENST00000460101 PBX2-003 retained_intron Homo_sapiens 0 427
ENST00000460888 PBX2-003 retained_intron Homo_sapiens 0 427
ENST00000461053 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000461385 PBX2-002 retained_intron Homo_sapiens 0 1086
ENST00000461857 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000462393 PBX2-004 retained_intron Homo_sapiens 0 985
ENST00000466603 PBX2-003 retained_intron Homo_sapiens 0 427
ENST00000466640 PBX2-003 retained_intron Homo_sapiens 0 427
ENST00000471428 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000473198 PBX2-004 retained_intron Homo_sapiens 0 985
ENST00000476638 PBX2-003 retained_intron Homo_sapiens 0 427
ENST00000478678 PBX2-002 retained_intron Homo_sapiens 0 1086
ENST00000479667 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000480009 PBX2-004 retained_intron Homo_sapiens 0 985
ENST00000480254 PBX2-003 retained_intron Homo_sapiens 0 427
ENST00000480293 PBX2-002 retained_intron Homo_sapiens 0 1086
ENST00000485304 PBX2-002 retained_intron Homo_sapiens 0 1086
ENST00000487027 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000488105 PBX2-004 retained_intron Homo_sapiens 0 985
ENST00000489815 PBX2-002 retained_intron Homo_sapiens 0 1086
ENST00000491147 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000493219 PBX2P1-001 processed_pseudogene Homo_sapiens 0 1367
ENST00000494427 PBX2-003 retained_intron Homo_sapiens 0 427
ENST00000494630 PBX2-002 retained_intron Homo_sapiens 0 1086
ENST00000495300 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000496171 PBX2-004 retained_intron Homo_sapiens 0 985
ENST00000497588 PBX2-004 retained_intron Homo_sapiens 0 985
ENST00000498292 PBX2-002 retained_intron Homo_sapiens 0 1086
ENST00000498723 PBX2-004 retained_intron Homo_sapiens 0 985

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