C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel modifier 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173462 Scnm1-003 ENSMUSG00000092607 10090 - 3:95129729-95134011 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000173462
Transcript ID Adipose Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000173462 5.539±0.42 10.432±1.87 8.229±2.07 10.831±1.14 4.777±0.00 10.347±3.90 5.963±0.83 6.266±1.66 9.412±2.12 9.827±3.92 12.353±1.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MO CIL_0003MO_0002 CGP 3:95124476-95134011
CIL_0000UG CIL_0000UG_0003 CGP 3:95129536-95139518

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IMP RNA splicing
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368902 SCNM1-004 protein_coding Homo_sapiens 0 363
ENST00000368905 SCNM1-001 protein_coding Homo_sapiens 0 449
ENST00000459799 SCNM1-005 processed_transcript Homo_sapiens 2e-33 147
ENST00000461862 SCNM1-002 processed_transcript Homo_sapiens 0 449
ENST00000497147 SCNM1-006 processed_transcript Homo_sapiens 0 292
ENST00000602841 SCNM1-007 protein_coding Homo_sapiens 0 363

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