C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc and ring finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173506 Znrf1-003 ENSMUSG00000033545 10090 + 8:111537120-111622973 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000173506
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000173506 13.984±0.00 29.419±6.39 22.572±5.28 37.164±16.90 27.648±5.32 14.948±3.21 17.464±0.56 7.225±1.97 17.232±1.23 15.712±1.04 21.350±6.20 10.501±1.23 29.085±13.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002PH CIL_0002PH_0002 CGP 8:111448784-111626030
CIL_0004Y8 CIL_0004Y8_0003 CGP 8:111536097-111630374

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISO:IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005764 IEA lysosome
GO:0005829 ISO cytosol
GO:0007010 TAS cytoskeleton organization
GO:0008270 IEA zinc ion binding
GO:0016020 ISO membrane
GO:0016567 ISO protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030054 IEA cell junction
GO:0031410 IEA cytoplasmic vesicle
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045202 IEA synapse
GO:0070936 IDA protein K48-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320619 ZNRF1-001 protein_coding Homo_sapiens 0 841
ENST00000335325 ZNRF1-002 protein_coding Homo_sapiens 0 1144
ENST00000564320 ZNRF1-008 processed_transcript Homo_sapiens 0 446
ENST00000566244 ZNRF1-004 retained_intron Homo_sapiens 2.99878e-43 182
ENST00000566250 ZNRF1-003 protein_coding Homo_sapiens 0 1018
ENST00000567962 ZNRF1-007 protein_coding Homo_sapiens 0 1142
ENST00000568323 WDR59-023 processed_transcript Homo_sapiens 3e-30 135
ENST00000568351 ZNRF1-010 protein_coding Homo_sapiens 2.99878e-43 180
ENST00000568494 ZNRF1-005 retained_intron Homo_sapiens 4e-35 154
ENST00000568511 ZNRF1-009 protein_coding Homo_sapiens 0 320
ENST00000579084 ZNRF1-012 processed_transcript Homo_sapiens 4.06377e-44 182

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