C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel modifier 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173527 Scnm1-005 ENSMUSG00000092607 10090 - 3:95130293-95133939 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENSMUST00000173527
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000173527 3.973±0.39 2.372±0.00 6.419±0.00 6.603±1.72 4.109±0.63 3.639±0.71 4.148±0.85 3.573±0.98 3.951±0.84 6.104±1.85 7.809±0.03 2.803±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MO CIL_0003MO_0002 CGP 3:95124476-95134011
CIL_0000UG CIL_0000UG_0003 CGP 3:95129536-95139518

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368902 SCNM1-004 protein_coding Homo_sapiens 0 353
ENST00000368905 SCNM1-001 protein_coding Homo_sapiens 0 353
ENST00000461862 SCNM1-002 processed_transcript Homo_sapiens 0 292
ENST00000497147 SCNM1-006 processed_transcript Homo_sapiens 0 355
ENST00000602841 SCNM1-007 protein_coding Homo_sapiens 0 353

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