C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongation factor Tu GTP binding domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173679 Eftud2-012 ENSMUSG00000020929 10090 - 11:102838801-102877714 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverOvaryENSMUST00000173679
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Ovary
ENSMUST00000173679 6.172±0.00 5.117±1.46 8.207±2.36 5.172±1.12 4.367±1.98 3.288±0.60 14.235±3.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0006U5 CIL_0006U5_0002 CGP 11:102835849-102880985
CIL_0006UA CIL_0006UA_0002 CGP 11:102838473-102885216

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0006184 IEA GTP catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017172 eftud2-201 protein_coding Danio_rerio 0 1672
ENSDART00000140067 eftud2-003 protein_coding Danio_rerio 0 1672
ENSDART00000127309 eftud2-002 protein_coding Danio_rerio 0 1046
ENSDART00000130575 eftud2-202 protein_coding Danio_rerio 0 462
ENSDART00000136465 eftud2-001 protein_coding Danio_rerio 0 462
ENST00000402521 EFTUD2-004 protein_coding Homo_sapiens 0 3411
ENST00000426333 EFTUD2-002 protein_coding Homo_sapiens 0 3411
ENST00000585616 EFTUD2-022 processed_transcript Homo_sapiens 0 737
ENST00000585794 EFTUD2-023 retained_intron Homo_sapiens 0 555
ENST00000586276 EFTUD2-008 retained_intron Homo_sapiens 0 870
ENST00000586654 EFTUD2-021 retained_intron Homo_sapiens 0 732
ENST00000587914 EFTUD2-024 retained_intron Homo_sapiens 0 381
ENST00000587957 EFTUD2-019 retained_intron Homo_sapiens 0 307
ENST00000588340 EFTUD2-028 retained_intron Homo_sapiens 2e-33 147
ENST00000588374 EFTUD2-015 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000589211 EFTUD2-029 processed_transcript Homo_sapiens 2e-22 110
ENST00000589475 EFTUD2-018 retained_intron Homo_sapiens 0 231
ENST00000589769 EFTUD2-026 nonsense_mediated_decay Homo_sapiens 0 503
ENST00000589825 EFTUD2-010 retained_intron Homo_sapiens 0 588
ENST00000590105 EFTUD2-013 retained_intron Homo_sapiens 8.99999e-40 167
ENST00000590124 EFTUD2-025 protein_coding Homo_sapiens 0 599
ENST00000590367 EFTUD2-007 retained_intron Homo_sapiens 0 2041
ENST00000590977 EFTUD2-009 retained_intron Homo_sapiens 0 649
ENST00000591382 EFTUD2-006 protein_coding Homo_sapiens 0 3411
ENST00000592408 EFTUD2-012 retained_intron Homo_sapiens 0 340
ENST00000592576 EFTUD2-003 protein_coding Homo_sapiens 0 3995
ENST00000592701 EFTUD2-014 protein_coding Homo_sapiens 0 457
ENST00000593072 EFTUD2-011 protein_coding Homo_sapiens 0 592
ENST00000593200 EFTUD2-017 retained_intron Homo_sapiens 0 527

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