C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173878 Rbm38-007 ENSMUSG00000027510 10090 + 2:173021899-173033913 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000173878
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000173878 7.419±0.84 27.763±4.54 20.132±0.00 6.900±0.00 65.006±23.81 20.967±1.69 48.881±0.34 2.759±0.50 31.367±33.58 14.232±2.78 24.316±2.97 21.569±0.32 4.502±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_00030G CIL_00030G_0002 CGP 2:173020498-173119525

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342690 RBM38-005 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000344785 RBM38-003 nonsense_mediated_decay Homo_sapiens 0 346
ENST00000356208 RBM38-001 protein_coding Homo_sapiens 0 739
ENST00000440234 RBM38-004 protein_coding Homo_sapiens 0 315

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