C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00038I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000109132-ENSG00000109133 CGP 9606 4:41744082-41960572
GeneTranscriptPositionBiotype
ENSG00000109132 (PHOX2B)
paired-like homeobox 2b 		ENST00000226382 (PHOX2B-001) 41744082-41748970 protein_coding
ENST00000510424 (PHOX2B-002) 41746033-41747709 processed_transcript
ENSG00000109133 (TMEM33)
transmembrane protein 33 		ENST00000264452 (TMEM33-002) 41935129-41954857 nonsense_mediated_decay
ENST00000325094 (TMEM33-201) 41935152-41960041 protein_coding
ENST00000504986 (TMEM33-001) 41935120-41960572 protein_coding
ENST00000506794 (TMEM33-008) 41935444-41949384 nonsense_mediated_decay
ENST00000508448 (TMEM33-003) 41935129-41954122 protein_coding
ENST00000510383 (TMEM33-005) 41935384-41944202 retained_intron
ENST00000513558 (TMEM33-007) 41939255-41954021 protein_coding
ENST00000513702 (TMEM33-004) 41935129-41954395 protein_coding
ENSG00000245870 (LINC00682)
long intergenic non-protein coding RNA 682 		ENST00000498940 (LINC00682-003) 41879547-41881843 lincRNA
ENST00000499082 (LINC00682-002) 41879521-41882570 lincRNA
ENST00000504870 (LINC00682-001) 41876481-41882611 lincRNA
ENSG00000249122 (RP11-227F19.2)
 ENST00000510602 (RP11-227F19.2-001) 41750345-41757341 lincRNA
ENSG00000249745 (HMGB1P28)
high mobility group box 1 pseudogene 28 		ENST00000507778 (HMGB1P28-001) 41842154-41843950 unprocessed_pseudogene
ENSG00000249771 (RP11-457P14.5)
 ENST00000510772 (RP11-457P14.5-001) 41883060-41894579 lincRNA
ENSG00000250467 (RP11-227F19.1)
 ENST00000508038 (RP11-227F19.1-001) 41748293-41824119 antisense
CIL_00038I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000012520-ENSMUSG00000037720 CGP 10090 5:67094405-67291461
GeneTranscriptPositionBiotype
ENSMUSG00000012520 (Phox2b)
paired-like homeobox 2b 		ENSMUST00000012664 (Phox2b-001) 67094405-67099301 protein_coding
ENSMUST00000174251 (Phox2b-002) 67097044-67099057 protein_coding
ENSMUSG00000037720 (Tmem33)
transmembrane protein 33 		ENSMUST00000037918 (Tmem33-001) 67260565-67291461 protein_coding
ENSMUST00000160352 (Tmem33-005) 67260697-67288246 protein_coding
ENSMUST00000161233 (Tmem33-006) 67260696-67268568 protein_coding
ENSMUST00000161369 (Tmem33-004) 67260805-67288010 protein_coding
ENSMUST00000162074 (Tmem33-007) 67260704-67264279 nonsense_mediated_decay
ENSMUST00000162543 (Tmem33-002) 67260652-67264612 protein_coding
ENSMUST00000163028 (Tmem33-003) 67260897-67269006 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00038I_0001ENSG00000109132ENST00000226382ENST00000510424ENSG00000109133ENST00000264452ENST00000325094ENST00000504986ENST00000506794ENST00000508448ENST00000510383ENST00000513558ENST00000513702ENSG00000245870ENST00000498940ENST00000499082ENST00000504870ENSG00000249122ENST00000510602ENSG00000249745ENST00000507778ENSG00000249771ENST00000510772ENSG00000250467ENST00000508038CIL_00038I_0002ENSMUSG00000012520ENSMUST00000012664ENSMUST00000174251ENSMUSG00000037720ENSMUST00000037918ENSMUST00000160352ENSMUST00000161233ENSMUST00000161369ENSMUST00000162074ENSMUST00000162543ENSMUST00000163028
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00038I_0001ENSG00000109132ENST00000226382ENST00000510424ENSG00000109133ENST00000264452ENST00000325094ENST00000504986ENST00000508448ENST00000513702ENSG00000245870ENST00000498940ENST00000499082ENST00000504870ENSG00000249122ENST00000510602ENSG00000249745ENST00000507778ENSG00000249771ENST00000510772ENSG00000250467ENST00000508038CIL_00038I_0002ENSMUSG00000012520ENSMUST00000012664ENSMUST00000174251ENSMUSG00000037720ENSMUST00000037918ENSMUST00000160352ENSMUST00000161233ENSMUST00000161369ENSMUST00000162543ENSMUST00000163028
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109132 ENST00000226382 N/A 0.006±0.00 N/A N/A 0.137±0.00 0.597±0.00 N/A N/A N/A N/A N/A N/A N/A 0.029±0.00
ENST00000510424 N/A N/A N/A N/A N/A 0.944±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000109133 ENST00000264452 N/A N/A N/A N/A N/A N/A N/A N/A 4.625±0.00 N/A N/A N/A 2.221±0.00 N/A
ENST00000325094 N/A N/A 1.887±0.00 N/A N/A 1.114±0.00 N/A N/A N/A 1.309±0.00 N/A N/A N/A N/A
ENST00000504986 2.945±0.00 1.373±0.00 N/A 5.068±1.22 1.824±0.29 1.978±0.61 1.101±0.21 3.872±0.52 3.622±1.29 2.346±1.53 1.077±0.00 2.587±1.50 2.395±1.14 0.960±0.56
ENST00000506794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508448 N/A N/A N/A N/A N/A N/A 2.742±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000510383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513702 N/A N/A N/A N/A 6.022±0.00 N/A N/A 6.826±0.00 N/A 7.347±0.00 N/A N/A 4.481±1.31 N/A
ENSG00000245870 ENST00000498940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.017±0.01
ENST00000499082 N/A N/A N/A 0.024±0.00 N/A 0.166±0.00 N/A N/A N/A N/A N/A N/A N/A 0.032±0.00
ENST00000504870 0.045±0.00 0.157±0.00 N/A 0.038±0.00 0.108±0.00 0.212±0.00 N/A N/A 0.019±0.00 N/A 0.020±0.00 0.038±0.00 N/A 0.062±0.00
ENSG00000249122 ENST00000510602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.127±0.00
ENSG00000249745 ENST00000507778 N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00
ENSG00000249771 ENST00000510772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.05
ENSG00000250467 ENST00000508038 N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A 0.026±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000012520 ENSMUST00000012664 0.025±0.02 7.084±1.25 0.190±0.02 3.736±2.25 N/A 2.182±0.47 0.075±0.02 0.118±0.05 0.028±0.03 0.022±0.01 N/A N/A 0.027±0.00 0.011±0.00
ENSMUST00000174251 N/A 6.429±2.16 N/A N/A N/A 1.177±0.35 N/A N/A 0.011±0.01 0.019±0.00 N/A N/A N/A N/A
ENSMUSG00000037720 ENSMUST00000037918 2.722±0.38 N/A 5.430±0.42 8.961±3.72 1.967±0.06 1.429±0.00 1.527±0.43 4.115±0.74 3.706±0.47 3.166±0.16 0.880±0.34 3.342±0.89 5.660±1.64 1.524±0.18
ENSMUST00000160352 5.979±0.41 62.506±7.21 6.312±1.16 7.663±0.00 18.736±10.13 13.373±6.21 3.858±1.01 23.171±0.00 6.682±1.38 8.609±2.02 1.702±0.59 26.762±8.98 9.252±2.77 4.810±2.36
ENSMUST00000161233 N/A N/A N/A N/A 47.821±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161369 5.882±0.59 22.261±4.21 6.412±1.21 3.975±1.91 5.703±0.76 7.908±1.56 2.010±0.22 13.095±2.17 13.566±5.71 4.905±0.54 0.925±0.31 7.031±2.78 10.590±4.48 1.140±0.51
ENSMUST00000162074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162543 23.746±5.03 20.071±5.42 N/A N/A 33.402±12.48 22.059±10.52 6.190±1.17 30.826±18.06 42.759±13.15 16.127±1.28 N/A 32.691±16.71 N/A 9.002±0.92
ENSMUST00000163028 23.151±2.30 22.743±0.00 N/A N/A 23.177±2.48 19.620±4.09 9.467±1.87 25.037±3.57 17.913±4.05 15.974±0.72 N/A 47.300±8.70 N/A 7.372±1.37

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