C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174259 Psme1-001 ENSMUSG00000022216 10090 + 14:55578360-55581528 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000174259
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000174259 29.105±8.62 28.203±9.46 60.728±1.44 28.264±14.63 24.198±4.78 12.560±1.87 30.922±2.71 17.942±2.64 30.807±16.72 20.917±1.32 19.170±2.43 24.574±12.91 20.752±7.32 2.648±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037E CIL_00037E_0002 CGP 14:55575617-55581529
CIL_00031C CIL_00031C_0002 CGP 14:55578123-55585302

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0008537 IEA proteasome activator complex
GO:0010950 IPI positive regulation of endopeptidase activity
GO:0019884 IMP antigen processing and presentation of exogenous antigen
GO:0061133 IPI endopeptidase activator activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000206451 PSME1-001 protein_coding Homo_sapiens 0 1055
ENST00000382708 PSME1-005 protein_coding Homo_sapiens 0 869
ENST00000470718 PSME1-004 processed_transcript Homo_sapiens 0 403
ENST00000558112 PSME1-012 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000559123 PSME1-006 protein_coding Homo_sapiens 0 981
ENST00000559741 PSME1-011 retained_intron Homo_sapiens 0 429
ENST00000560420 PSME1-008 retained_intron Homo_sapiens 1.96182e-44 183
ENST00000561142 PSME1-010 retained_intron Homo_sapiens 0 614
ENST00000561435 PSME1-009 protein_coding Homo_sapiens 0 994

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