C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000561142 PSME1-010 ENSG00000092010 9606 + 14:24136197-24138787 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastOvaryPlacentaTestisENST00000561142
Transcript ID Adipose Adrenal Bladder Breast Ovary Placenta Testis
ENST00000561142 23.673±0.00 48.015±0.00 2.036±0.00 19.892±0.00 25.118±0.00 53.242±0.00 6.741±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037E CIL_00037E_0001 CGP 14:24131275-24138967
CIL_00031C CIL_00031C_0001 CGP 14:24136158-24141588

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174791 Psme1-011 retained_intron Mus_musculus 0 837
ENSMUST00000174259 Psme1-001 protein_coding Mus_musculus 0 614
ENSMUST00000174484 Psme1-006 protein_coding Mus_musculus 0 590
ENSMUST00000089619 Psme1-012 protein_coding Mus_musculus 0 582
ENSMUST00000172738 Psme1-003 protein_coding Mus_musculus 0 490
ENSMUST00000191211 RP24-148E21.3-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000174563 Psme1-010 protein_coding Mus_musculus 0 453
ENSMUST00000174148 Psme1-007 retained_intron Mus_musculus 0 353
ENSMUST00000174419 Psme1-009 nonsense_mediated_decay Mus_musculus 0 335
ENSMUST00000173544 Psme1-002 retained_intron Mus_musculus 4e-16 90

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