C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558112 PSME1-012 ENSG00000092010 9606 + 14:24137520-24138959 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverOvaryTestisENST00000558112
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Ovary Testis
ENST00000558112 42.163±0.00 91.095±0.00 32.399±0.00 39.092±0.00 54.328±0.00 80.722±0.00 24.523±0.00 76.740±0.00 50.814±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037E CIL_00037E_0001 CGP 14:24131275-24138967
CIL_00031C CIL_00031C_0001 CGP 14:24136158-24141588

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008537 IEA proteasome activator complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174148 Psme1-007 retained_intron Mus_musculus 0 686
ENSMUST00000174259 Psme1-001 protein_coding Mus_musculus 0 686
ENSMUST00000174484 Psme1-006 protein_coding Mus_musculus 0 582
ENSMUST00000191211 RP24-148E21.3-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000174419 Psme1-009 nonsense_mediated_decay Mus_musculus 0 449
ENSMUST00000172738 Psme1-003 protein_coding Mus_musculus 0 372
ENSMUST00000089619 Psme1-012 protein_coding Mus_musculus 0 318
ENSMUST00000173544 Psme1-002 retained_intron Mus_musculus 9.80909e-45 183
ENSMUST00000174791 Psme1-011 retained_intron Mus_musculus 5e-24 115
ENSMUST00000187022 RP23-109H7.1-001 processed_pseudogene Mus_musculus 7e-18 95

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