C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174681 Pax7-002 ENSMUSG00000028736 10090 - 4:139740676-139833007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLungENSMUST00000174681
Transcript ID Brain Breast Heart Kidney Lung
ENSMUST00000174681 1.572±0.00 0.042±0.01 0.012±0.00 0.020±0.01 0.027±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CW CIL_0008CW_0002 VISTA 4:139530774-140132378
CIL_00098Z CIL_00098Z_0002 VISTA 4:139710918-140312273

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000983 IDA RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0006338 IMP chromatin remodeling
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007519 IMP skeletal muscle tissue development
GO:0009887 TAS organ morphogenesis
GO:0010453 IMP regulation of cell fate commitment
GO:0010468 IMP regulation of gene expression
GO:0014813 IMP skeletal muscle satellite cell commitment
GO:0021527 IGI spinal cord association neuron differentiation
GO:0021904 IDA dorsal/ventral neural tube patterning
GO:0031062 IDA positive regulation of histone methylation
GO:0043393 IMP regulation of protein binding
GO:0043403 IMP skeletal muscle tissue regeneration
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048663 IGI neuron fate commitment
GO:0048706 IMP embryonic skeletal system development
GO:0051216 IMP cartilage development
GO:0060415 IGI muscle tissue morphogenesis
GO:2000288 IMP positive regulation of myoblast proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000124068 PAX7 (3 of 3)-201 protein_coding Danio_rerio 0 510
ENSDART00000014350 pax3a-201 protein_coding Danio_rerio 0 383
ENSDART00000038828 pax3a-001 protein_coding Danio_rerio 0 383
ENST00000375375 PAX7-001 protein_coding Homo_sapiens 0 1882
ENST00000400661 PAX7-003 protein_coding Homo_sapiens 0 1836
ENST00000420770 PAX7-002 protein_coding Homo_sapiens 0 2049

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