C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176229 Lhx2-007 ENSMUSG00000000247 10090 + 2:38351768-38354631 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WO CIL_0006WO_0002 CGP 2:37798991-38369733
CIL_000847 CIL_000847_0002 VISTA 2:37842558-38444874
CIL_0008FJ CIL_0008FJ_0002 VISTA 2:37895268-38499898
CIL_0007MV CIL_0007MV_0002 UCNEbase 2:38111928-38614796
CIL_0008N3 CIL_0008N3_0002 VISTA 2:38235055-38837083
CIL_00098L CIL_00098L_0002 VISTA 2:38294702-38895720
CIL_0006WH CIL_0006WH_0002 CGP 2:38339281-38588041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001076 IPI RNA polymerase II transcription factor binding transcription factor activity
GO:0001843 IMP neural tube closure
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0006366 IPI transcription from RNA polymerase II promoter
GO:0007399 IMP nervous system development
GO:0007411 IMP axon guidance
GO:0007420 IMP brain development
GO:0007498 IMP mesoderm development
GO:0009953 IMP dorsal/ventral pattern formation
GO:0021537 IMP telencephalon development
GO:0021772 IMP olfactory bulb development
GO:0021978 IGI telencephalon regionalization
GO:0021987 IMP cerebral cortex development
GO:0022008 IDA neurogenesis
GO:0030182 IMP neuron differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048646 IMP anatomical structure formation involved in morphogenesis
GO:0048675 IDA axon extension
GO:0060041 IGI retina development in camera-type eye
GO:2000678 IGI negative regulation of transcription regulatory region DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000367387 LHX9-004 protein_coding Homo_sapiens 0 298
ENST00000367390 LHX9-001 protein_coding Homo_sapiens 0 298
ENST00000367391 LHX9-003 protein_coding Homo_sapiens 0 298
ENST00000373615 LHX2-001 protein_coding Homo_sapiens 0 577
ENST00000446480 LHX2-002 protein_coding Homo_sapiens 0 466
ENST00000560961 LHX2-004 protein_coding Homo_sapiens 0 579
ENST00000561173 LHX9-007 protein_coding Homo_sapiens 0 298

Loading