C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008FJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1794 VISTA 9606 9:123533313-124136573
GeneTranscriptPositionBiotype
ENSG00000106689 (LHX2)
LIM homeobox 2 		ENST00000373615 (LHX2-001) 124011610-124033301 protein_coding
ENST00000446480 (LHX2-002) 124012357-124032884 protein_coding
ENST00000488674 (LHX2-003) 124015397-124033301 protein_coding
ENST00000560961 (LHX2-004) 124001670-124015361 protein_coding
ENSG00000229115 (RP11-417B4.3)
 ENST00000411924 (RP11-417B4.3-001) 123759220-123759775 processed_pseudogene
ENSG00000230826 (RP11-417B4.2)
 ENST00000423942 (RP11-417B4.2-001) 123736437-123751941 antisense
ENSG00000231227 (RP11-85O21.4)
 ENST00000421041 (RP11-85O21.4-001) 124010530-124011114 sense_overlapping
ENSG00000234881 (PIGFP2)
phosphatidylinositol glycan anchor biosynthesis, class F, pseudogene 2 		ENST00000421400 (PIGFP2-001) 123843036-123843686 processed_pseudogene
ENSG00000234921 (RP11-85O21.5)
 ENST00000429482 (RP11-85O21.5-001) 124031624-124032524 antisense
ENSG00000236668 (RP11-85O21.2)
 ENST00000453529 (RP11-85O21.2-001) 124006277-124009396 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0008FJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1794 VISTA 10090 2:37895268-38499898
GeneTranscriptPositionBiotype
ENSMUSG00000000247 (Lhx2)
LIM homeobox protein 2 		ENSMUST00000000253 (Lhx2-001) 38350759-38369733 protein_coding
ENSMUST00000133661 (Lhx2-005) 38341092-38354825 protein_coding
ENSMUST00000143783 (Lhx2-003) 38339281-38369199 protein_coding
ENSMUST00000149664 (Lhx2-004) 38339488-38353693 retained_intron
ENSMUST00000155964 (Lhx2-002) 38352532-38354573 protein_coding
ENSMUST00000175896 (Lhx2-006) 38353802-38360089 retained_intron
ENSMUST00000176229 (Lhx2-007) 38351768-38354631 nonsense_mediated_decay
ENSMUSG00000035392 (Dennd1a)
DENN/MADD domain containing 1A 		ENSMUST00000102787 (Dennd1a-001) 37798991-38287375 protein_coding
ENSMUST00000126889 (Dennd1a-009) 38021266-38166081 retained_intron
ENSMUST00000128492 (Dennd1a-006) 38242917-38287214 retained_intron
ENSMUST00000130472 (Dennd1a-007) 37936664-38287188 protein_coding
ENSMUST00000136116 (Dennd1a-008) 38159252-38243470 retained_intron
ENSMUST00000136460 (Dennd1a-010) 37801072-37852440 protein_coding
ENSMUST00000140552 (Dennd1a-002) 37816916-38287390 nonsense_mediated_decay
ENSMUST00000142813 (Dennd1a-005) 38126604-38287218 nonsense_mediated_decay
ENSMUST00000143095 (Dennd1a-004) 38043346-38287358 nonsense_mediated_decay
ENSMUST00000150896 (Dennd1a-003) 37936619-38287377 nonsense_mediated_decay
ENSMUSG00000084124 (Gm13588)
predicted gene 13588 		ENSMUST00000120026 (Gm13588-001) 38490104-38490238 processed_pseudogene
ENSMUSG00000085950 (Gm13589)
predicted gene 13589 		ENSMUST00000146404 (Gm13589-001) 38424002-38455851 lincRNA
ENSMUSG00000087539 (Gm13584)
predicted gene 13584 		ENSMUST00000137134 (Gm13584-001) 38359580-38363980 antisense
ENSMUSG00000098383 (Gm27197)
predicted gene 27197 		ENSMUST00000184325 (Gm27197-001) 38347357-38348316 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008FJ_0001ENSG00000106689ENST00000373615ENST00000446480ENST00000488674ENST00000560961ENSG00000229115ENST00000411924ENSG00000230826ENST00000423942ENSG00000231227ENST00000421041ENSG00000234881ENST00000421400ENSG00000234921ENST00000429482ENSG00000236668ENST00000453529CIL_0008FJ_0002ENSMUSG00000000247ENSMUST00000000253ENSMUST00000133661ENSMUST00000143783ENSMUST00000149664ENSMUST00000155964ENSMUST00000175896ENSMUST00000176229ENSMUSG00000035392ENSMUST00000102787ENSMUST00000126889ENSMUST00000128492ENSMUST00000130472ENSMUST00000136116ENSMUST00000136460ENSMUST00000140552ENSMUST00000142813ENSMUST00000143095ENSMUST00000150896ENSMUSG00000084124ENSMUST00000120026ENSMUSG00000085950ENSMUST00000146404ENSMUSG00000087539ENSMUST00000137134ENSMUSG00000098383ENSMUST00000184325
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008FJ_0001ENSG00000106689ENST00000373615ENST00000446480ENST00000488674ENST00000560961ENSG00000229115ENST00000411924ENSG00000230826ENST00000423942ENSG00000231227ENST00000421041ENSG00000234881ENST00000421400ENSG00000234921ENST00000429482ENSG00000236668ENST00000453529CIL_0008FJ_0002ENSMUSG00000000247ENSMUST00000000253ENSMUST00000133661ENSMUST00000143783ENSMUST00000149664ENSMUST00000155964ENSMUST00000175896ENSMUSG00000035392ENSMUST00000102787ENSMUST00000136460ENSMUST00000140552ENSMUSG00000084124ENSMUST00000120026ENSMUSG00000085950ENSMUST00000146404ENSMUSG00000087539ENSMUST00000137134ENSMUSG00000098383ENSMUST00000184325
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106689 ENST00000373615 N/A N/A N/A 6.159±0.00 N/A N/A N/A N/A 0.671±0.00 N/A N/A 0.032±0.00 0.274±0.00 0.505±0.12
ENST00000446480 N/A N/A N/A N/A N/A 0.219±0.00 0.049±0.00 N/A N/A N/A N/A 0.055±0.00 0.584±0.36 1.384±0.00
ENST00000488674 0.075±0.00 0.123±0.00 N/A 3.635±0.42 N/A N/A 0.070±0.00 N/A 0.331±0.00 0.063±0.00 N/A 0.028±0.00 0.420±0.23 0.467±0.00
ENST00000560961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.912±0.00 2.369±0.00
ENSG00000229115 ENST00000411924 N/A N/A N/A N/A N/A 1.984±0.00 N/A N/A N/A N/A N/A 0.148±0.05 N/A N/A
ENSG00000230826 ENST00000423942 0.062±0.00 0.063±0.00 0.262±0.00 N/A 0.541±0.00 0.058±0.00 0.055±0.00 0.131±0.01 0.039±0.00 1.218±0.00 N/A 0.114±0.06 0.089±0.00 0.045±0.00
ENSG00000231227 ENST00000421041 N/A N/A N/A 0.362±0.18 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.275±0.04
ENSG00000234881 ENST00000421400 N/A N/A 0.976±0.00 0.272±0.20 0.126±0.00 1.711±0.00 0.071±0.00 0.664±0.57 1.997±0.00 2.926±0.00 N/A 0.452±0.39 0.065±0.00 0.128±0.00
ENSG00000234921 ENST00000429482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.612±0.00
ENSG00000236668 ENST00000453529 0.007±0.00 0.007±0.00 N/A 0.287±0.14 N/A N/A N/A N/A 0.006±0.00 0.050±0.04 N/A N/A N/A 0.066±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000247 ENSMUST00000000253 0.017±0.01 0.020±0.01 0.005±0.00 15.924±8.74 0.409±0.09 0.058±0.04 0.020±0.01 0.036±0.02 1.739±0.53 0.009±0.00 0.013±0.00 0.141±0.10 2.024±1.17 N/A
ENSMUST00000133661 0.123±0.00 N/A 0.027±0.00 N/A 1.356±0.12 0.084±0.00 N/A N/A 1.593±0.12 N/A N/A 0.098±0.00 N/A N/A
ENSMUST00000143783 N/A N/A N/A 17.166±2.46 N/A N/A N/A 0.033±0.00 N/A N/A 0.218±0.00 0.057±0.00 N/A N/A
ENSMUST00000149664 N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A
ENSMUST00000155964 0.135±0.00 N/A N/A N/A N/A 0.613±0.00 N/A N/A N/A N/A N/A 0.157±0.00 N/A N/A
ENSMUST00000175896 0.071±0.00 N/A 0.003±0.00 N/A N/A 0.019±0.00 N/A 0.021±0.00 N/A 0.036±0.00 N/A 0.033±0.00 N/A N/A
ENSMUST00000176229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035392 ENSMUST00000102787 3.719±0.45 5.022±0.49 3.454±0.41 6.129±1.69 3.536±1.50 2.330±0.87 1.969±0.20 6.359±1.35 2.426±0.76 3.403±1.19 1.216±0.52 3.972±1.82 5.783±2.70 4.729±2.10
ENSMUST00000126889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136460 N/A N/A N/A 11.806±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140552 N/A N/A N/A 8.584±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084124 ENSMUST00000120026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.588±0.00 N/A
ENSMUSG00000085950 ENSMUST00000146404 0.069±0.02 0.168±0.06 0.026±0.01 0.252±0.04 0.140±0.05 0.112±0.07 0.067±0.01 0.090±0.07 0.025±0.02 0.143±0.06 0.039±0.02 0.166±0.06 0.083±0.03 1.000±0.44
ENSMUSG00000087539 ENSMUST00000137134 N/A N/A N/A 0.684±0.40 N/A N/A N/A N/A 0.076±0.06 N/A N/A N/A 0.087±0.08 1.288±0.72
ENSMUSG00000098383 ENSMUST00000184325 N/A N/A N/A 0.811±0.52 N/A N/A N/A N/A 0.038±0.02 N/A N/A N/A 0.232±0.21 0.281±0.19

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