C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 5A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176381 Stx5a-001 ENSMUSG00000010110 10090 + 19:8741413-8756069 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000176381
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000176381 8.578±2.47 9.672±0.82 6.216±1.50 6.622±0.36 3.273±0.60 6.757±0.82 6.732±1.26 8.416±1.23 1.445±0.01 6.074±0.00 10.853±0.24 5.205±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005484 IEA SNAP receptor activity
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0016021 IEA integral component of membrane
GO:0016192 TAS vesicle-mediated transport
GO:0031201 IEA SNARE complex
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0047485 IEA protein N-terminus binding
GO:0048280 IEA vesicle fusion with Golgi apparatus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294179 STX5-001 protein_coding Homo_sapiens 0 1703
ENST00000377897 STX5-002 protein_coding Homo_sapiens 0 1153
ENST00000394690 STX5-005 protein_coding Homo_sapiens 0 1434
ENST00000431400 STX5-007 protein_coding Homo_sapiens 0 558
ENST00000486437 STX5-006 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000488303 STX5-008 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000491231 STX5-004 nonsense_mediated_decay Homo_sapiens 0 1589
ENST00000492066 STX5-003 nonsense_mediated_decay Homo_sapiens 0 1256

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