C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: syntaxin 5A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177322 Stx5a-005 ENSMUSG00000010110 10090 + 19:8741413-8755586 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMusclePlacentaENSMUST00000177322
Transcript ID Liver Muscle Placenta
ENSMUST00000177322 6.819±0.00 2.856±0.56 7.344±3.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0016192 TAS vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294179 STX5-001 protein_coding Homo_sapiens 0 1251
ENST00000377897 STX5-002 protein_coding Homo_sapiens 0 771
ENST00000394690 STX5-005 protein_coding Homo_sapiens 0 1251
ENST00000431400 STX5-007 protein_coding Homo_sapiens 0 558
ENST00000486437 STX5-006 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000488303 STX5-008 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000491231 STX5-004 nonsense_mediated_decay Homo_sapiens 0 1206
ENST00000492066 STX5-003 nonsense_mediated_decay Homo_sapiens 0 1580

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