C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 170, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181188 RP23-174D7.1-001 ENSMUSG00000101800 10090 + 7:26072073-26072931 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000181188
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000181188 0.174±0.12 0.292±0.08 0.044±0.03 0.078±0.02 0.448±0.29 0.323±0.18 0.217±0.16 0.330±0.17 0.311±0.32 0.085±0.02 0.030±0.00 0.516±0.20 0.040±0.02 0.169±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007H6 CIL_0007H6_000G CGP 7:25897620-26096196
CIL_0007H6 CIL_0007H6_000I CGP 7:26061495-26210661

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240159 RNF170-004 nonsense_mediated_decay Homo_sapiens 0 505
ENST00000319073 RNF170-201 protein_coding Homo_sapiens 0 505
ENST00000526349 RNF170-003 protein_coding Homo_sapiens 0 791
ENST00000527424 RNF170-001 protein_coding Homo_sapiens 0 893
ENST00000528318 RNF170-002 retained_intron Homo_sapiens 0 534
ENST00000534961 RNF170-202 protein_coding Homo_sapiens 0 893

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