C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 170
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000527424 RNF170-001 ENSG00000120925 9606 - 8:42853301-42896721 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000527424
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000527424 3.582±0.00 0.363±0.00 3.438±0.36 1.584±0.69 1.469±0.00 0.701±0.26 2.386±0.03 1.434±0.38 0.953±0.00 1.163±0.19 2.869±0.86 3.767±0.62 2.089±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LW CIL_0005LW_0002 CGP 8:42849637-43030539

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000014022 Rnf170-001 protein_coding Mus_musculus 0 948
ENSMUST00000181188 RP23-174D7.1-001 processed_pseudogene Mus_musculus 0 893
ENSMUST00000153528 Rnf170-006 protein_coding Mus_musculus 0 795
ENSMUST00000124757 Rnf170-002 nonsense_mediated_decay Mus_musculus 0 534
ENSMUST00000110579 Rnf170-003 nonsense_mediated_decay Mus_musculus 0 424
ENSMUST00000124867 Rnf170-004 nonsense_mediated_decay Mus_musculus 0 353

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