C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 170
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534961 RNF170-202 ENSG00000120925 9606 - 8:42853297-42896723 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLungPlacentaTestisENST00000534961
Transcript ID Brain Colon Heart Kidney Lung Placenta Testis
ENST00000534961 1.400±0.00 0.395±0.00 1.068±0.00 1.875±0.00 0.542±0.32 1.028±0.00 0.801±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LW CIL_0005LW_0002 CGP 8:42849637-43030539

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000014022 Rnf170-001 protein_coding Mus_musculus 0 948
ENSMUST00000181188 RP23-174D7.1-001 processed_pseudogene Mus_musculus 0 893
ENSMUST00000153528 Rnf170-006 protein_coding Mus_musculus 0 795
ENSMUST00000124757 Rnf170-002 nonsense_mediated_decay Mus_musculus 0 534
ENSMUST00000110579 Rnf170-003 nonsense_mediated_decay Mus_musculus 0 424
ENSMUST00000124867 Rnf170-004 nonsense_mediated_decay Mus_musculus 0 353

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