C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 170
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000526349 RNF170-003 ENSG00000120925 9606 - 8:42855707-42896706 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLungOvaryPlacentaTestisENST00000526349
Transcript ID Heart Lung Ovary Placenta Testis
ENST00000526349 0.578±0.00 0.537±0.00 11.761±0.00 15.372±0.00 5.498±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LW CIL_0005LW_0002 CGP 8:42849637-43030539

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000014022 Rnf170-001 protein_coding Mus_musculus 0 821
ENSMUST00000153528 Rnf170-006 protein_coding Mus_musculus 0 797
ENSMUST00000181188 RP23-174D7.1-001 processed_pseudogene Mus_musculus 0 791
ENSMUST00000124757 Rnf170-002 nonsense_mediated_decay Mus_musculus 0 534
ENSMUST00000110579 Rnf170-003 nonsense_mediated_decay Mus_musculus 0 388
ENSMUST00000124867 Rnf170-004 nonsense_mediated_decay Mus_musculus 0 353

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