C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 16399
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181423 Gm16399-001 ENSMUSG00000097790 10090 - 3:14802356-14802574 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006T1 CIL_0006T1_0002 CGP 3:14641727-14808368
CIL_0006T2 CIL_0006T2_0002 CGP 3:14766216-14872351

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297564 COX6C-003 protein_coding Homo_sapiens 6e-37 158
ENST00000401679 RP11-129H15.1-001 processed_pseudogene Homo_sapiens 6e-19 97
ENST00000437445 RP3-461P17.6-001 processed_pseudogene Homo_sapiens 2e-18 95
ENST00000444980 COX6CP2-001 processed_pseudogene Homo_sapiens 4e-31 137
ENST00000490840 COX6CP6-001 processed_pseudogene Homo_sapiens 2e-39 165
ENST00000517682 COX6C-005 protein_coding Homo_sapiens 5e-37 158
ENST00000518171 COX6C-002 protein_coding Homo_sapiens 9e-37 158
ENST00000520271 COX6C-007 protein_coding Homo_sapiens 7e-37 158
ENST00000520468 COX6C-001 protein_coding Homo_sapiens 1e-36 158
ENST00000520517 COX6C-009 nonsense_mediated_decay Homo_sapiens 7e-37 158
ENST00000522934 COX6C-010 nonsense_mediated_decay Homo_sapiens 7e-37 158
ENST00000522940 COX6C-006 protein_coding Homo_sapiens 9e-37 158
ENST00000523016 COX6C-004 protein_coding Homo_sapiens 1e-36 158
ENST00000524245 COX6C-008 protein_coding Homo_sapiens 7e-37 158
ENST00000555293 COX6CP11-001 processed_pseudogene Homo_sapiens 3e-27 124
ENST00000603667 COX6CP16-001 processed_pseudogene Homo_sapiens 2e-24 115
ENST00000605137 RP11-290D2.5-001 processed_pseudogene Homo_sapiens 6e-34 147

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