C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome c oxidase subunit VIc
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000522934 COX6C-010 ENSG00000164919 9606 - 8:99873200-99893706 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000522934
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000522934 46.758±0.00 235.993±0.00 41.986±0.00 52.697±0.00 72.214±32.25 55.841±0.00 31.213±17.80 50.259±40.54 76.657±6.12 16.402±0.00 36.904±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026G CIL_00026G_0001 CGP 8:98944403-99877580
CIL_0006JN CIL_0006JN_0001 CGP 8:99013266-99894062
CIL_0008YK CIL_0008YK_0001 VISTA 8:99368181-99969581
CIL_0006JM CIL_0006JM_0001 CGP 8:99873200-100131268

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004129 IEA cytochrome-c oxidase activity
GO:0005739 IDA mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0006091 TAS generation of precursor metabolites and energy
GO:0016021 IEA integral component of membrane
GO:0022904 TAS respiratory electron transport chain
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153512 Cox6c-004 protein_coding Mus_musculus 0 237
ENSMUST00000014457 Cox6c-001 protein_coding Mus_musculus 0 237
ENSMUST00000127999 Cox6c-002 retained_intron Mus_musculus 6.99949e-42 174
ENSMUST00000149263 Gm6265-001 processed_pseudogene Mus_musculus 3e-40 169
ENSMUST00000181423 Gm16399-001 processed_pseudogene Mus_musculus 7e-37 158

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