C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 1 (elfin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182540 Pdlim1-005 ENSMUSG00000055044 10090 - 19:40222363-40223356 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000182540
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000182540 18.830±0.85 2.565±0.03 2.571±0.00 11.840±3.70 83.232±21.21 7.875±1.12 4.067±1.65 10.141±0.95 27.525±5.36 29.371±13.01 92.247±16.64 2.197±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095J CIL_00095J_0002 VISTA 19:40075645-40678667
CIL_0007T2 CIL_0007T2_0002 VISTA 19:40167411-40768695
CIL_00067J CIL_00067J_0002 CGP 19:40221173-40402267

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329399 PDLIM1-001 protein_coding Homo_sapiens 0 396
ENST00000477757 PDLIM1-002 processed_transcript Homo_sapiens 0 289
ENST00000492511 PDLIM1-004 processed_transcript Homo_sapiens 0 390

Loading