C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 1 (elfin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182813 Pdlim1-004 ENSMUSG00000055044 10090 - 19:40222523-40230805 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000182813
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000182813 1.944±0.00 14.325±5.45 110.809±45.39 0.645±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095J CIL_00095J_0002 VISTA 19:40075645-40678667
CIL_0007T2 CIL_0007T2_0002 VISTA 19:40167411-40768695
CIL_00067J CIL_00067J_0002 CGP 19:40221173-40402267

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329399 PDLIM1-001 protein_coding Homo_sapiens 0 514
ENST00000477757 PDLIM1-002 processed_transcript Homo_sapiens 0 418
ENST00000490391 PDLIM1-005 processed_transcript Homo_sapiens 0 207
ENST00000492511 PDLIM1-004 processed_transcript Homo_sapiens 0 372
ENST00000504327 PDLIM1P4-001 processed_pseudogene Homo_sapiens 0 303

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