C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S13, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183478 Rps13-ps1-001 ENSMUSG00000066362 10090 + 8:87047689-87048226 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000183478
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000183478 6.907±1.84 14.656±1.65 1.012±0.28 1.192±0.85 5.455±1.09 16.215±12.04 11.598±2.67 17.363±8.15 14.943±14.96 3.574±1.85 0.157±0.07 9.489±9.07 0.760±0.43 11.197±1.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F8 CIL_0008F8_0002 VISTA 8:86820551-87422269
CIL_0002VO CIL_0002VO_0002 CGP 8:86841139-87472592
CIL_0008WB CIL_0008WB_0002 VISTA 8:86970549-87571379

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228140 RPS13-010 protein_coding Homo_sapiens 0 372
ENST00000437890 RPS13P2-001 processed_pseudogene Homo_sapiens 0 464
ENST00000525634 RPS13-001 protein_coding Homo_sapiens 0 556
ENST00000525828 RPS13-005 retained_intron Homo_sapiens 0 507
ENST00000526895 RPS13-002 processed_transcript Homo_sapiens 0 531
ENST00000528074 RPS13-004 retained_intron Homo_sapiens 2e-22 110
ENST00000531908 RPS13-008 retained_intron Homo_sapiens 0 359
ENST00000533969 RPS13-007 protein_coding Homo_sapiens 0 198
ENST00000534329 RPS13-003 retained_intron Homo_sapiens 0 207

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