C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183538 St6galnac6-002 ENSMUSG00000026811 10090 + 2:32607040-32620806 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000183538
Transcript ID Adipose Bladder Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000183538 3.882±0.75 1.813±0.05 3.025±0.23 1.298±0.16 1.463±0.16 4.099±0.64 3.745±0.25 0.471±0.18 0.977±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001574 IDA ganglioside biosynthetic process
GO:0001665 IDA alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0008373 IDA sialyltransferase activity
GO:0009312 IDA oligosaccharide biosynthetic process
GO:0009988 IC cell-cell recognition
GO:0016021 IEA integral component of membrane
GO:0097503 IDA:IEA sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263671 CHRDL2-001 protein_coding Homo_sapiens 0.0001 53
ENST00000291839 ST6GALNAC6-201 protein_coding Homo_sapiens 0 1373
ENST00000373141 ST6GALNAC6-010 protein_coding Homo_sapiens 0 1325
ENST00000373142 ST6GALNAC6-006 protein_coding Homo_sapiens 0 1500
ENST00000373144 ST6GALNAC6-008 protein_coding Homo_sapiens 0 1325
ENST00000373146 ST6GALNAC6-007 protein_coding Homo_sapiens 0 1526
ENST00000447681 ST6GALNAC6-011 protein_coding Homo_sapiens 0 809
ENST00000463086 ST6GALNAC6-014 processed_transcript Homo_sapiens 0 335
ENST00000478319 ST6GALNAC6-004 processed_transcript Homo_sapiens 0 327
ENST00000480417 ST6GALNAC6-012 processed_transcript Homo_sapiens 0 588
ENST00000481355 ST6GALNAC6-001 processed_transcript Homo_sapiens 0 433
ENST00000485320 ST6GALNAC6-009 processed_transcript Homo_sapiens 0 1607
ENST00000494541 ST6GALNAC6-013 processed_transcript Homo_sapiens 0 525
ENST00000494611 ST6GALNAC6-005 processed_transcript Homo_sapiens 5e-23 111
ENST00000527755 HINFP-004 retained_intron Homo_sapiens 0.0002 53
ENST00000542456 ST6GALNAC6-202 protein_coding Homo_sapiens 0 601
ENST00000590054 CCDC159-003 retained_intron Homo_sapiens 0.000001 58
ENST00000622357 ST6GALNAC6-203 protein_coding Homo_sapiens 0 1325

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