C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184646 Lhx1-004 ENSMUSG00000018698 10090 - 11:84519442-84522331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000184646
Transcript ID Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000184646 0.093±0.00 0.022±0.00 3.981±1.22 0.013±0.01 0.025±0.00 0.095±0.07 0.068±0.00 1.893±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008GS CIL_0008GS_0002 VISTA 11:84076005-84677109
CIL_0008DP CIL_0008DP_0002 VISTA 11:84095730-84696774
CIL_00085M CIL_00085M_0002 VISTA 11:84181126-84782244
CIL_00085Q CIL_00085Q_0002 VISTA 11:84196288-84796920
CIL_0007ND CIL_0007ND_007N UCNEbase 11:84271978-84766400
CIL_0007YB CIL_0007YB_0004 VISTA 11:84425827-85026602
CIL_00085R CIL_00085R_0002 VISTA 11:84466073-85066769

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000614239 LHX1-001 protein_coding Homo_sapiens 0 1299
ENST00000616237 LHX1-003 retained_intron Homo_sapiens 0 599
ENST00000619939 LHX1-002 retained_intron Homo_sapiens 0 307
ENST00000620305 LHX1-201 protein_coding Homo_sapiens 0 1301
ENST00000621767 LHX1-004 protein_coding Homo_sapiens 9e-21 104

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