C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008GS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs819 VISTA 9606 17:36817120-37418221
GeneTranscriptPositionBiotype
ENSG00000273706 (LHX1)
LIM homeobox 1 		ENST00000614239 (LHX1-001) 36937475-36944612 protein_coding
ENST00000616237 (LHX1-003) 36938460-36941394 retained_intron
ENST00000619297 (LHX1-005) 36936785-36937846 processed_transcript
ENST00000619939 (LHX1-002) 36937635-36941531 retained_intron
ENST00000621767 (LHX1-004) 36942298-36943685 protein_coding
ENSG00000273965 (RP11-378E13.4)
 ENST00000620218 (RP11-378E13.4-001) 37407936-37408594 antisense
ENSG00000274308 (RP11-19G24.1)
 ENST00000610837 (RP11-19G24.1-001) 37140611-37141424 processed_pseudogene
ENSG00000275029 (RP11-19G24.3)
 ENST00000611897 (RP11-19G24.3-002) 37144136-37144463 processed_transcript
ENST00000615653 (RP11-19G24.3-001) 37143607-37144291 transcribed_processed_pseudogene
ENSG00000276054 (RP11-378E13.3)
 ENST00000617427 (RP11-378E13.3-001) 37386886-37387926 sense_intronic
ENSG00000276234 (TADA2A)
transcriptional adaptor 2A 		ENST00000610834 (TADA2A-007) 37406886-37438073 retained_intron
ENST00000612272 (TADA2A-002) 37407224-37477228 protein_coding
ENST00000614112 (TADA2A-010) 37406886-37442617 protein_coding
ENST00000614122 (TADA2A-009) 37406890-37465471 nonsense_mediated_decay
ENST00000615182 (TADA2A-001) 37406874-37479730 protein_coding
ENST00000615328 (TADA2A-006) 37407314-37465541 protein_coding
ENST00000616284 (TADA2A-015) 37461820-37470497 retained_intron
ENST00000618662 (TADA2A-017) 37423568-37426666 processed_transcript
ENST00000619335 (TADA2A-014) 37450565-37476956 processed_transcript
ENST00000619777 (TADA2A-012) 37437737-37476850 nonsense_mediated_decay
ENST00000620086 (TADA2A-011) 37436387-37471109 processed_transcript
ENST00000620367 (TADA2A-003) 37406939-37465653 protein_coding
ENST00000620628 (TADA2A-004) 37406890-37478267 nonsense_mediated_decay
ENST00000620838 (TADA2A-013) 37406907-37437955 retained_intron
ENST00000621780 (TADA2A-008) 37407248-37440579 protein_coding
ENST00000622085 (TADA2A-016) 37477419-37478442 processed_transcript
ENSG00000276707 (RP11-445F12.2)
 ENST00000614759 (RP11-445F12.2-001) 36940049-36943456 antisense
ENSG00000276810 (RP11-19G24.2)
 ENST00000620102 (RP11-19G24.2-001) 37162616-37163139 processed_pseudogene
ENSG00000277268 (RP11-445F12.1)
 ENST00000612281 (RP11-445F12.1-002) 36907288-36936652 antisense
ENST00000614277 (RP11-445F12.1-003) 36906995-36936658 antisense
ENST00000616341 (RP11-445F12.1-004) 36861674-36936661 antisense
ENST00000621428 (RP11-445F12.1-001) 36932109-36936622 antisense
ENSG00000277579 (CTC-268N12.3)
 ENST00000615419 (CTC-268N12.3-001) 37034668-37043252 sense_intronic
ENSG00000277589 (RP11-333J10.3)
 ENST00000620689 (RP11-333J10.3-001) 36998598-37000034 sense_intronic
ENSG00000277911 (RP11-333J10.2)
 ENST00000613270 (RP11-333J10.2-001) 36980167-36980422 sense_intronic
ENSG00000278505 (C17orf78)
chromosome 17 open reading frame 78 		ENST00000611038 (C17orf78-002) 37375986-37392706 protein_coding
ENST00000615133 (C17orf78-001) 37376043-37392708 protein_coding
ENSG00000278638 (CTC-268N12.2)
 ENST00000619606 (CTC-268N12.2-001) 37045462-37052775 antisense
ENSG00000278660 (AC243654.1)
 ENST00000615856 (AC243654.1-201) 37314341-37314439 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008GS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs819 VISTA 10090 11:84076005-84677109
GeneTranscriptPositionBiotype
ENSMUSG00000018651 (Tada2a)
transcriptional adaptor 2A 		ENSMUST00000018795 (Tada2a-001) 84078920-84129600 protein_coding
ENSMUST00000125566 (Tada2a-003) 84082038-84087460 processed_transcript
ENSMUST00000134994 (Tada2a-004) 84085431-84087512 processed_transcript
ENSMUST00000141852 (Tada2a-005) 84079636-84093854 protein_coding
ENSMUST00000156151 (Tada2a-002) 84079531-84082956 processed_transcript
ENSMUSG00000018697 (Aatf)
apoptosis antagonizing transcription factor 		ENSMUST00000018841 (Aatf-001) 84422855-84513522 protein_coding
ENSMUST00000127042 (Aatf-004) 84422883-84491550 processed_transcript
ENSMUST00000141093 (Aatf-003) 84442509-84449533 retained_intron
ENSMUST00000148434 (Aatf-002) 84466905-84513522 retained_intron
ENSMUSG00000018698 (Lhx1)
LIM homeobox protein 1 		ENSMUST00000018842 (Lhx1-001) 84518284-84525535 protein_coding
ENSMUST00000092827 (Lhx1-002) 84521896-84522711 protein_coding
ENSMUST00000176503 (Lhx1-003) 84519706-84522067 retained_intron
ENSMUST00000184646 (Lhx1-004) 84519442-84522331 protein_coding
ENSMUSG00000020532 (Acaca)
acetyl-Coenzyme A carboxylase alpha 		ENSMUST00000020843 (Acaca-201) 84195438-84401645 protein_coding
ENSMUST00000103201 (Acaca-001) 84173122-84401651 protein_coding
ENSMUST00000130012 (Acaca-004) 84179831-84231692 protein_coding
ENSMUST00000133811 (Acaca-005) 84129672-84214290 protein_coding
ENSMUST00000136463 (Acaca-002) 84179858-84214184 protein_coding
ENSMUST00000137500 (Acaca-003) 84179831-84214195 protein_coding
ENSMUST00000183548 (Acaca-007) 84173354-84233808 retained_intron
ENSMUST00000183887 (Acaca-008) 84280455-84311401 protein_coding
ENSMUST00000184534 (Acaca-006) 84129700-84133111 processed_transcript
ENSMUSG00000051452 (Gm11437)
predicted gene 11437 		ENSMUST00000050771 (Gm11437-001) 84148351-84167476 protein_coding
ENSMUSG00000087211 (Lhx1os)
LIM homeobox 1, opposite strand 		ENSMUST00000126072 (Lhx1os-003) 84525669-84535831 lincRNA
ENSMUST00000128121 (Lhx1os-001) 84525684-84535830 lincRNA
ENSMUST00000134800 (Lhx1os-002) 84525660-84535831 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000273706 ENST00000614239 N/A N/A 0.843±0.00 0.022±0.00 N/A N/A N/A 4.362±0.00 N/A N/A N/A 0.531±0.00 0.016±0.00 0.152±0.05
ENST00000616237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00
ENST00000619939 N/A N/A N/A N/A N/A 0.271±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621767 N/A N/A N/A N/A 0.142±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000273965 ENST00000620218 9.210±0.00 16.948±0.00 N/A 8.468±0.00 11.820±0.00 6.655±0.00 5.177±0.00 10.175±0.00 6.184±0.00 9.514±0.00 2.586±0.00 4.172±4.00 N/A 5.435±5.25
ENSG00000274308 ENST00000610837 0.069±0.00 0.196±0.00 N/A 0.055±0.00 0.326±0.27 N/A N/A 0.075±0.00 0.506±0.00 0.185±0.07 0.021±0.00 0.126±0.06 N/A 0.157±0.00
ENSG00000275029 ENST00000611897 N/A 0.095±0.00 N/A 0.131±0.00 1.860±0.00 1.162±0.00 0.090±0.04 0.109±0.00 1.211±0.00 0.155±0.00 N/A 2.717±2.31 N/A 0.392±0.11
ENST00000615653 0.018±0.00 0.061±0.00 0.218±0.00 0.129±0.01 0.293±0.16 0.070±0.00 N/A 0.694±0.64 0.752±0.00 0.368±0.00 0.504±0.00 0.288±0.15 0.146±0.00 0.211±0.08
ENSG00000276054 ENST00000617427 0.352±0.00 1.247±0.00 N/A 0.278±0.07 0.556±0.00 0.458±0.06 0.346±0.00 0.304±0.00 0.434±0.00 0.225±0.00 0.106±0.00 0.373±0.16 0.401±0.00 0.510±0.01
ENSG00000276234 ENST00000610834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.885±0.00 N/A N/A N/A
ENST00000612272 N/A N/A N/A N/A N/A N/A 0.457±0.00 2.370±0.00 0.911±0.48 2.663±0.00 0.719±0.00 3.193±1.17 2.375±1.26 6.587±3.54
ENST00000614112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614122 N/A N/A N/A N/A 1.745±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615182 0.281±0.00 0.987±0.00 N/A 1.984±0.00 0.752±0.00 0.470±0.00 0.250±0.00 0.797±0.45 0.820±0.00 0.265±0.00 N/A 1.688±0.12 1.468±0.54 3.318±0.00
ENST00000615328 N/A N/A 0.806±0.00 N/A N/A N/A 1.063±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000616284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619335 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.214±0.00 N/A N/A N/A N/A
ENST00000619777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.271±0.00 N/A N/A 6.460±0.00
ENST00000620367 N/A N/A N/A N/A N/A 1.350±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620628 1.618±0.00 4.140±0.00 1.198±0.00 4.034±0.00 2.271±0.59 1.860±0.48 0.802±0.10 1.813±0.00 1.136±0.22 0.945±0.51 2.068±0.00 3.227±1.08 2.749±0.57 4.906±0.92
ENST00000620838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622085 N/A N/A N/A N/A N/A 3.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276707 ENST00000614759 N/A N/A N/A 0.086±0.00 N/A N/A N/A 7.457±0.00 N/A N/A N/A N/A 0.128±0.00 N/A
ENSG00000276810 ENST00000620102 N/A 0.034±0.00 N/A 0.249±0.18 0.469±0.00 0.540±0.00 N/A 0.034±0.00 0.587±0.00 N/A N/A 0.164±0.06 N/A 0.304±0.00
ENSG00000277268 ENST00000612281 N/A N/A 0.717±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00
ENST00000616341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621428 N/A N/A N/A N/A N/A N/A N/A 13.323±0.00 N/A N/A N/A 0.731±0.00 0.050±0.00 0.208±0.08
ENSG00000277579 ENST00000615419 0.027±0.00 0.259±0.00 N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A 0.136±0.00 0.442±0.00 0.168±0.00 0.158±0.00
ENSG00000277589 ENST00000620689 0.045±0.00 0.427±0.00 N/A 0.059±0.00 0.241±0.09 0.351±0.00 0.084±0.00 0.216±0.00 0.098±0.05 0.043±0.01 0.212±0.00 0.188±0.23 0.107±0.00 0.121±0.05
ENSG00000277911 ENST00000613270 N/A 0.524±0.00 N/A N/A N/A N/A N/A 0.415±0.00 N/A N/A N/A 0.178±0.00 N/A N/A
ENSG00000278505 ENST00000611038 0.014±0.00 0.168±0.00 0.196±0.00 0.059±0.00 N/A N/A 0.035±0.02 N/A 0.057±0.05 0.162±0.00 N/A 0.087±0.04 0.018±0.00 0.326±0.04
ENST00000615133 N/A N/A N/A 0.067±0.00 N/A N/A N/A 0.076±0.00 N/A N/A N/A 0.030±0.00 N/A N/A
ENSG00000278638 ENST00000619606 0.044±0.00 0.413±0.00 N/A 0.149±0.00 0.048±0.00 0.061±0.00 0.147±0.00 0.093±0.00 N/A N/A N/A 0.100±0.02 N/A 0.104±0.00
ENSG00000278660 ENST00000615856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.278±0.00 N/A 1.209±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018651 ENSMUST00000018795 4.689±2.40 2.413±0.49 6.920±1.03 12.566±3.83 2.627±1.05 3.602±0.81 2.650±0.47 3.529±0.21 4.635±3.00 3.752±1.68 5.917±0.85 6.137±2.09 6.382±2.11 2.321±0.19
ENSMUST00000125566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.459±0.00 N/A N/A
ENSMUST00000134994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141852 N/A N/A N/A 23.871±0.00 N/A N/A N/A N/A N/A N/A N/A 10.682±0.00 9.978±0.00 4.528±0.00
ENSMUST00000156151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000018697 ENSMUST00000018841 2.472±1.04 3.732±1.70 3.068±0.81 3.670±1.23 2.933±1.85 4.184±1.26 1.140±0.45 4.055±0.91 3.932±2.00 2.559±0.33 3.600±0.33 7.220±5.17 11.521±6.67 19.515±29.01
ENSMUST00000127042 N/A N/A N/A N/A 2.260±0.00 N/A 0.346±0.00 5.108±0.27 2.170±0.30 N/A N/A N/A 8.672±0.00 5.458±0.84
ENSMUST00000141093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148434 N/A 1.026±0.25 N/A N/A 0.457±0.16 0.642±0.18 N/A N/A 0.569±0.14 0.530±0.17 N/A 1.593±0.89 0.757±0.08 N/A
ENSMUSG00000018698 ENSMUST00000018842 N/A 0.029±0.00 N/A 8.959±6.32 N/A N/A N/A 2.508±0.58 0.015±0.01 N/A N/A 0.041±0.02 0.048±0.01 0.190±0.04
ENSMUST00000092827 N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.02 N/A N/A N/A N/A N/A
ENSMUST00000176503 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A 0.164±0.08 N/A N/A
ENSMUST00000184646 N/A N/A N/A N/A 0.093±0.00 N/A 0.022±0.00 3.981±1.22 0.013±0.01 0.025±0.00 N/A 0.095±0.07 0.068±0.00 1.893±0.56
ENSMUSG00000020532 ENSMUST00000020843 120.182±39.53 56.883±25.01 6.088±0.49 10.220±3.50 158.072±23.54 3.682±1.73 3.163±1.26 12.394±4.26 6.013±3.49 14.199±1.82 1.009±0.42 14.142±5.39 3.889±2.15 4.076±0.85
ENSMUST00000103201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.185±0.00 N/A N/A
ENSMUST00000130012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051452 ENSMUST00000050771 0.106±0.05 N/A 0.010±0.00 0.120±0.00 N/A 0.640±0.39 N/A 0.031±0.00 1.832±1.42 N/A N/A 0.092±0.06 0.024±0.00 0.034±0.02
ENSMUSG00000087211 ENSMUST00000126072 N/A N/A N/A N/A N/A N/A N/A 0.859±0.00 N/A N/A N/A N/A 0.063±0.00 0.068±0.00
ENSMUST00000128121 N/A N/A N/A 0.280±0.00 N/A N/A N/A 1.842±0.00 N/A N/A N/A N/A 0.050±0.00 0.247±0.09
ENSMUST00000134800 N/A N/A N/A 0.711±0.00 N/A N/A N/A 5.824±1.15 N/A N/A N/A 0.264±0.01 0.132±0.03 0.397±0.00

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