C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELKS/RAB6-interacting/CAST family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185139 Erc1-003 ENSMUSG00000030172 10090 - 6:119572630-119848099 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartLiverLungTestisENSMUST00000185139
Transcript ID Adrenal Breast Heart Liver Lung Testis
ENSMUST00000185139 1.458±0.41 1.915±0.49 1.639±0.00 0.710±0.00 1.156±0.26 1.461±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C1 CIL_0006C1_0002 CGP 6:119479668-119848167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0017137 IDA Rab GTPase binding
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041169 erc1a-201 protein_coding Danio_rerio 0 298
ENSDART00000012923 erc1a-002 protein_coding Danio_rerio 0 298
ENSDART00000149142 erc1a-001 protein_coding Danio_rerio 0 298
ENST00000347735 ERC1-008 nonsense_mediated_decay Homo_sapiens 0 3203
ENST00000355446 ERC1-011 protein_coding Homo_sapiens 0 1932
ENST00000360905 ERC1-014 protein_coding Homo_sapiens 0 1932
ENST00000397203 ERC1-201 protein_coding Homo_sapiens 0 3723
ENST00000440394 ERC1-013 nonsense_mediated_decay Homo_sapiens 0 4386
ENST00000515210 ERC1-012 processed_transcript Homo_sapiens 2e-23 113
ENST00000536573 ERC1-003 processed_transcript Homo_sapiens 0 1249
ENST00000538971 ERC1-016 retained_intron Homo_sapiens 0 2150
ENST00000539007 ERC1-017 retained_intron Homo_sapiens 0 396
ENST00000539802 ERC1-020 protein_coding Homo_sapiens 0 252
ENST00000542302 ERC1-010 nonsense_mediated_decay Homo_sapiens 0 1796
ENST00000543086 ERC1-001 protein_coding Homo_sapiens 0 3723
ENST00000543151 ERC1-002 retained_intron Homo_sapiens 0 401
ENST00000543263 ERC1-018 processed_transcript Homo_sapiens 0 542
ENST00000544277 ERC1-007 processed_transcript Homo_sapiens 0 270
ENST00000545318 ERC1-005 protein_coding Homo_sapiens 0 394
ENST00000545948 ERC1-004 nonsense_mediated_decay Homo_sapiens 0 2314
ENST00000546231 ERC1-015 protein_coding Homo_sapiens 0 2010
ENST00000588412 ERC1-019 nonsense_mediated_decay Homo_sapiens 0 1528
ENST00000589028 ERC1-202 protein_coding Homo_sapiens 0 1932
ENST00000589132 ERC1-023 protein_coding Homo_sapiens 0 638
ENST00000592048 ERC1-006 protein_coding Homo_sapiens 0 1362
ENST00000611180 ERC1-203 protein_coding Homo_sapiens 0 2314

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