C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tachykinin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185187 Tac1-001 ENSMUSG00000061762 10090 + 6:7554879-7562977 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverOvaryPlacentaENSMUST00000185187
Transcript ID Bladder Brain Breast Colon Heart Liver Ovary Placenta
ENSMUST00000185187 0.055±0.00 10.002±6.94 0.116±0.00 4.858±1.15 0.149±0.01 0.018±0.01 0.318±0.15 0.039±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BH CIL_0003BH_0003 CGP 6:6956004-7565834
CIL_0005L4 CIL_0005L4_0003 CGP 6:7554879-7693254

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002675 IEA positive regulation of acute inflammatory response
GO:0005515 IEA protein binding
GO:0005576 IDA extracellular region
GO:0005615 IEA extracellular space
GO:0005886 IEA plasma membrane
GO:0006954 IDA inflammatory response
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007217 IEA tachykinin receptor signaling pathway
GO:0007218 IEA neuropeptide signaling pathway
GO:0007268 IEA synaptic transmission
GO:0007616 IEA long-term memory
GO:0008217 IEA regulation of blood pressure
GO:0008306 IEA associative learning
GO:0009725 IEA response to hormone
GO:0010459 IEA negative regulation of heart rate
GO:0010634 IEA positive regulation of epithelial cell migration
GO:0019233 IMP sensory perception of pain
GO:0030424 IDA axon
GO:0031835 IEA substance P receptor binding
GO:0032224 IEA positive regulation of synaptic transmission, cholinergic
GO:0032230 IEA positive regulation of synaptic transmission, GABAergic
GO:0032496 IEA response to lipopolysaccharide
GO:0035815 IEA positive regulation of renal sodium excretion
GO:0043025 IDA neuronal cell body
GO:0043278 IEA response to morphine
GO:0045760 IEA positive regulation of action potential
GO:0045778 IEA positive regulation of ossification
GO:0046878 IEA positive regulation of saliva secretion
GO:0048265 IMP response to pain
GO:0050671 IEA positive regulation of lymphocyte proliferation
GO:0051496 IEA positive regulation of stress fiber assembly
GO:2000854 IEA positive regulation of corticosterone secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319273 TAC1-001 protein_coding Homo_sapiens 0 965
ENST00000346867 TAC1-002 protein_coding Homo_sapiens 0 429
ENST00000350485 TAC1-003 protein_coding Homo_sapiens 0 448
ENST00000491437 TAC1-005 retained_intron Homo_sapiens 0 357

Loading