C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tachykinin, precursor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350485 TAC1-003 ENSG00000006128 9606 + 7:97732084-97740438 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungOvaryENST00000350485
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Ovary
ENST00000350485 2.113±0.00 0.148±0.00 1.647±0.80 0.174±0.00 0.132±0.00 0.018±0.00 0.180±0.00 0.069±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BH CIL_0003BH_0002 CGP 7:97116590-97740472
CIL_0005L4 CIL_0005L4_0002 CGP 7:97731908-97872542

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0007204 IDA positive regulation of cytosolic calcium ion concentration
GO:0007217 IEA tachykinin receptor signaling pathway
GO:0007218 IEA neuropeptide signaling pathway
GO:0007267 TAS cell-cell signaling
GO:0007268 IEA synaptic transmission
GO:0007320 TAS insemination
GO:0009582 TAS detection of abiotic stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090679 Tac1-004 protein_coding Mus_musculus 0 701
ENSMUST00000185187 Tac1-001 protein_coding Mus_musculus 0 448
ENSMUST00000184986 Tac1-002 protein_coding Mus_musculus 0 394
ENSMUST00000185130 Tac1-005 protein_coding Mus_musculus 3e-38 163

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