C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003BH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036092-ENSDARG00000014490 CGP 7955 19:26012019-26138850
GeneTranscriptPositionBiotype
ENSDARG00000036092 (acn9)
ACN9 homolog (S. cerevisiae) 		ENSDART00000052396 (acn9-001) 26012019-26034295 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003BH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196636-ENSG00000006128 CGP 9606 7:97116590-97740472
GeneTranscriptPositionBiotype
ENSG00000006128 (TAC1)
tachykinin, precursor 1 		ENST00000319273 (TAC1-001) 97731908-97740472 protein_coding
ENST00000346867 (TAC1-002) 97732084-97740465 protein_coding
ENST00000350485 (TAC1-003) 97732084-97740438 protein_coding
ENST00000491437 (TAC1-005) 97733954-97740063 retained_intron
ENST00000495916 (TAC1-004) 97732161-97733090 retained_intron
ENSG00000196636 (ACN9)
ACN9 homolog (S. cerevisiae) 		ENST00000360382 (ACN9-002) 97117723-97181487 protein_coding
ENST00000432641 (ACN9-001) 97116590-97181763 protein_coding
ENST00000479853 (ACN9-003) 97142681-97181647 processed_transcript
ENST00000489852 (ACN9-004) 97117701-97142835 processed_transcript
ENSG00000224475 (AC073900.4)
 ENST00000429766 (AC073900.4-001) 97200708-97201483 processed_pseudogene
ENSG00000224551 (HMGB3P21)
high mobility group box 3 pseudogene 21 		ENST00000452483 (HMGB3P21-001) 97135015-97135561 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003BH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042505-ENSMUSG00000061762 CGP 10090 6:6956004-7565834
GeneTranscriptPositionBiotype
ENSMUSG00000042505 (Acn9)
ACN9 homolog (S. cerevisiae) 		ENSMUST00000040826 (Acn9-001) 6956004-7042979 protein_coding
ENSMUST00000123848 (Acn9-002) 6956007-6965658 processed_transcript
ENSMUSG00000061762 (Tac1)
tachykinin 1 		ENSMUST00000090679 (Tac1-004) 7555074-7562976 protein_coding
ENSMUST00000184481 (Tac1-003) 7562368-7565834 processed_transcript
ENSMUST00000184986 (Tac1-002) 7555096-7562700 protein_coding
ENSMUST00000185130 (Tac1-005) 7556091-7559114 protein_coding
ENSMUST00000185187 (Tac1-001) 7554879-7562977 protein_coding
ENSMUSG00000098421 (Gm27190)
predicted gene 27190 		ENSMUST00000184890 (Gm27190-001) 7193548-7194172 processed_pseudogene
ENSMUSG00000098501 (Gm19272)
predicted gene, 19272 		ENSMUST00000184133 (Gm19272-001) 7301908-7309747 lincRNA
ENSMUST00000185181 (Gm19272-002) 7301908-7306753 lincRNA
ENSMUSG00000099178 (Gm8669)
predicted gene 8669 		ENSMUST00000183839 (Gm8669-001) 7194272-7195216 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BH_0001ENSDARG00000036092ENSDART00000052396CIL_0003BH_0002ENSG00000006128ENST00000319273ENST00000346867ENST00000350485ENST00000491437ENST00000495916ENSG00000196636ENST00000360382ENST00000432641ENST00000479853ENST00000489852ENSG00000224475ENST00000429766ENSG00000224551ENST00000452483CIL_0003BH_0003ENSMUSG00000042505ENSMUST00000040826ENSMUST00000123848ENSMUSG00000061762ENSMUST00000090679ENSMUST00000184481ENSMUST00000184986ENSMUST00000185130ENSMUST00000185187ENSMUSG00000098421ENSMUST00000184890ENSMUSG00000098501ENSMUST00000184133ENSMUST00000185181ENSMUSG00000099178ENSMUST00000183839
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BH_0001ENSDARG00000036092ENSDART00000052396CIL_0003BH_0002ENSG00000006128ENST00000319273ENST00000346867ENST00000350485ENST00000491437ENST00000495916ENSG00000196636ENST00000360382ENST00000432641ENST00000479853ENST00000489852ENSG00000224475ENST00000429766ENSG00000224551ENST00000452483CIL_0003BH_0003ENSMUSG00000042505ENSMUST00000040826ENSMUST00000123848ENSMUSG00000061762ENSMUST00000090679ENSMUST00000184481ENSMUST00000184986ENSMUST00000185130ENSMUST00000185187ENSMUSG00000098421ENSMUST00000184890ENSMUSG00000098501ENSMUST00000184133ENSMUST00000185181ENSMUSG00000099178ENSMUST00000183839
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036092 ENSDART00000052396 N/A N/A N/A 7.232±2.19 N/A N/A 3.613±2.74 3.277±0.48 0.242±0.00 N/A 4.020±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000006128 ENST00000319273 N/A N/A N/A 1.889±0.51 0.480±0.00 0.631±0.00 N/A 0.104±0.00 N/A 0.052±0.00 N/A N/A N/A N/A
ENST00000346867 N/A 0.100±0.00 N/A 0.884±0.02 N/A 1.846±0.00 0.152±0.00 N/A N/A N/A N/A 0.070±0.00 N/A 0.304±0.16
ENST00000350485 N/A N/A N/A 2.113±0.00 0.148±0.00 1.647±0.80 0.174±0.00 0.132±0.00 0.018±0.00 0.180±0.00 N/A 0.069±0.05 N/A N/A
ENST00000491437 0.040±0.00 N/A N/A N/A 0.130±0.00 N/A 0.214±0.00 N/A N/A N/A N/A 0.040±0.03 N/A 0.538±0.00
ENST00000495916 0.229±0.00 0.094±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 N/A
ENSG00000196636 ENST00000360382 0.912±0.00 3.131±0.00 N/A 1.857±1.10 2.189±0.77 2.627±0.00 1.960±1.09 2.757±0.88 2.239±0.00 1.552±0.00 0.365±0.31 4.133±3.59 1.369±0.74 4.966±0.01
ENST00000432641 0.548±0.00 1.084±0.00 0.372±0.00 1.239±0.13 1.047±0.48 0.854±0.21 0.656±0.30 1.362±0.77 0.830±0.58 0.702±0.05 0.111±0.00 2.005±0.19 0.604±0.11 2.949±0.40
ENST00000479853 1.950±0.00 1.532±0.00 N/A 1.078±0.00 1.154±0.00 1.479±0.78 3.113±0.00 4.426±0.00 3.698±0.00 0.774±0.00 0.906±0.00 2.656±0.62 1.114±0.42 3.117±0.00
ENST00000489852 N/A N/A 1.150±0.00 N/A N/A 1.658±0.00 N/A N/A 0.423±0.00 N/A 0.679±0.00 N/A N/A 2.890±0.00
ENSG00000224475 ENST00000429766 0.061±0.00 0.022±0.00 N/A N/A 0.045±0.00 0.041±0.00 N/A 0.044±0.00 N/A 0.021±0.00 0.075±0.00 0.057±0.00 N/A 0.078±0.00
ENSG00000224551 ENST00000452483 N/A 0.020±0.00 0.964±0.00 0.061±0.00 N/A N/A N/A N/A 0.749±0.00 N/A N/A 0.285±0.23 N/A 0.035±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042505 ENSMUST00000040826 0.531±0.06 0.308±0.11 0.695±0.04 1.111±0.12 0.328±0.05 0.261±0.12 0.463±0.15 0.564±0.10 0.519±0.13 0.452±0.12 1.995±0.38 0.422±0.34 0.397±0.15 0.349±0.11
ENSMUST00000123848 0.294±0.00 0.511±0.16 N/A N/A N/A 0.180±0.11 N/A 0.514±0.09 0.623±0.15 N/A N/A 0.648±0.00 0.495±0.18 0.373±0.15
ENSMUSG00000061762 ENSMUST00000090679 N/A N/A 0.056±0.00 7.837±1.52 0.176±0.10 4.288±1.25 0.313±0.22 N/A 0.043±0.04 N/A 0.085±0.00 0.554±0.27 0.027±0.00 N/A
ENSMUST00000184481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.400±2.31
ENSMUST00000184986 N/A N/A 0.052±0.00 30.950±36.43 0.217±0.00 2.241±0.00 N/A N/A 0.043±0.00 0.116±0.00 N/A 1.036±0.58 0.059±0.02 N/A
ENSMUST00000185130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.366±0.00 N/A N/A
ENSMUST00000185187 N/A N/A 0.055±0.00 10.002±6.94 0.116±0.00 4.858±1.15 0.149±0.01 N/A 0.018±0.01 N/A N/A 0.318±0.15 0.039±0.03 N/A
ENSMUSG00000098421 ENSMUST00000184890 N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000098501 ENSMUST00000184133 0.022±0.00 N/A 0.004±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.003±0.00 0.338±0.04
ENSMUST00000185181 N/A N/A 0.013±0.00 0.003±0.00 N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A 0.239±0.07
ENSMUSG00000099178 ENSMUST00000183839 N/A N/A N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.067±0.01

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