C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type I, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000187469 Scn1b-003 ENSMUSG00000019194 10090 - 7:31117706-31125420 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaTestisENSMUST00000187469
Transcript ID Brain Breast Ovary Placenta Testis
ENSMUST00000187469 189.406±0.00 73.624±0.00 3.476±2.03 0.221±0.14 0.147±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VC CIL_0001VC_0002 CGP 7:31116524-31155896

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262631 SCN1B-001 protein_coding Homo_sapiens 0 708
ENST00000415950 SCN1B-003 protein_coding Homo_sapiens 0 514
ENST00000595652 SCN1B-002 protein_coding Homo_sapiens 0 237
ENST00000596348 SCN1B-005 processed_transcript Homo_sapiens 0 673
ENST00000602150 SCN1B-004 retained_intron Homo_sapiens 0 198

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