C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001VC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060222-ENSDARG00000076689 CGP 7955 16:44643168-44730654
GeneTranscriptPositionBiotype
ENSDARG00000060222 (scn1ba)
sodium channel, voltage-gated, type I, beta a 		ENSDART00000058611 (scn1ba-002) 44643294-44667205 protein_coding
ENSDART00000084631 (scn1ba-001) 44643168-44667039 protein_coding
ENSDART00000084639 (scn1ba-004) 44643294-44667040 protein_coding
ENSDART00000131491 (scn1ba-003) 44643294-44658757 retained_intron
ENSDARG00000076689 (gramd1a)
GRAM domain containing 1A 		ENSDART00000111956 (gramd1a-201) 44672438-44725046 protein_coding
ENSDART00000136755 (gramd1a-002) 44706298-44730654 processed_transcript
ENSDART00000142648 (gramd1a-001) 44672409-44714225 protein_coding
ENSDARG00000091933 (si:ch211-225p5.9)
si:ch211-225p5.9 		ENSDART00000136742 (si:ch211-225p5.9-001) 44725315-44734769 processed_transcript
ENSDARG00000093087 (si:ch211-225p5.10)
si:ch211-225p5.10 		ENSDART00000134300 (si:ch211-225p5.10-001) 44717535-44718576 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0001VC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019194-ENSMUSG00000001248 CGP 10090 7:31116524-31155896
GeneTranscriptPositionBiotype
ENSMUSG00000001248 (Gramd1a)
GRAM domain containing 1A 		ENSMUST00000001280 (Gramd1a-001) 31130127-31151050 protein_coding
ENSMUST00000085636 (Gramd1a-201) 31130127-31151014 protein_coding
ENSMUST00000185514 (Gramd1a-006) 31139821-31151012 nonsense_mediated_decay
ENSMUST00000185589 (Gramd1a-005) 31132309-31133314 retained_intron
ENSMUST00000185985 (Gramd1a-003) 31130127-31151012 retained_intron
ENSMUST00000186634 (Gramd1a-002) 31130127-31151033 nonsense_mediated_decay
ENSMUST00000186723 (Gramd1a-008) 31142604-31155896 protein_coding
ENSMUST00000187679 (Gramd1a-007) 31141136-31152069 protein_coding
ENSMUST00000188032 (Gramd1a-004) 31130127-31151012 retained_intron
ENSMUSG00000019194 (Scn1b)
sodium channel, voltage-gated, type I, beta 		ENSMUST00000098548 (Scn1b-001) 31116524-31126945 protein_coding
ENSMUST00000187469 (Scn1b-003) 31117706-31125420 retained_intron
ENSMUST00000188002 (Scn1b-004) 31116524-31126844 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VC_0001ENSDARG00000060222ENSDART00000058611ENSDART00000084631ENSDART00000084639ENSDART00000131491ENSDARG00000076689ENSDART00000111956ENSDART00000136755ENSDART00000142648ENSDARG00000091933ENSDART00000136742ENSDARG00000093087ENSDART00000134300CIL_0001VC_0002ENSMUSG00000001248ENSMUST00000001280ENSMUST00000085636ENSMUST00000185514ENSMUST00000185589ENSMUST00000185985ENSMUST00000186634ENSMUST00000186723ENSMUST00000187679ENSMUST00000188032ENSMUSG00000019194ENSMUST00000098548ENSMUST00000187469ENSMUST00000188002
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VC_0001ENSDARG00000060222ENSDART00000058611ENSDART00000084631ENSDART00000084639ENSDARG00000076689ENSDART00000111956ENSDART00000142648ENSDARG00000091933ENSDART00000136742ENSDARG00000093087ENSDART00000134300CIL_0001VC_0002ENSMUSG00000001248ENSMUST00000001280ENSMUST00000185514ENSMUST00000185985ENSMUST00000186634ENSMUSG00000019194ENSMUST00000098548ENSMUST00000187469ENSMUST00000188002
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000060222 ENSDART00000058611 N/A N/A N/A N/A N/A N/A 6.421±4.94 6.938±4.76 N/A N/A 0.923±0.00 N/A N/A N/A
ENSDART00000084631 N/A N/A N/A 13.026±2.12 N/A N/A 0.253±0.00 N/A N/A N/A 1.287±0.00 N/A N/A N/A
ENSDART00000084639 N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A
ENSDART00000131491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000076689 ENSDART00000111956 N/A N/A N/A 11.166±7.81 N/A N/A 1.440±0.02 5.431±1.59 N/A N/A 4.149±0.00 N/A N/A N/A
ENSDART00000136755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142648 N/A N/A N/A 6.816±0.00 N/A N/A N/A N/A N/A N/A 0.765±0.00 N/A N/A N/A
ENSDARG00000091933 ENSDART00000136742 N/A N/A N/A 0.442±0.31 N/A N/A 0.244±0.00 3.838±0.00 0.099±0.00 N/A 1.112±0.00 N/A N/A N/A
ENSDARG00000093087 ENSDART00000134300 N/A N/A N/A N/A N/A N/A 1.966±1.69 0.761±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001248 ENSMUST00000001280 11.343±2.83 11.645±1.81 7.540±0.03 40.378±22.65 20.854±1.58 4.130±0.48 5.069±0.89 4.010±1.03 4.759±2.18 7.423±0.64 5.579±0.34 14.535±0.67 13.326±4.56 4.567±0.92
ENSMUST00000085636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185514 N/A 126.959±31.82 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185985 7.781±2.69 N/A 10.709±1.89 43.962±12.06 14.006±2.67 3.589±0.32 3.041±0.65 2.787±0.55 3.475±2.09 6.695±0.26 2.824±0.72 19.547±14.61 19.573±9.41 2.269±0.60
ENSMUST00000186634 15.126±3.34 36.814±5.65 3.963±0.00 23.433±0.00 45.299±21.61 13.123±1.68 4.106±1.87 5.942±1.07 2.956±1.03 15.297±2.68 N/A 33.932±9.20 2.848±0.00 1.868±0.25
ENSMUST00000186723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000019194 ENSMUST00000098548 17.994±2.24 8.304±4.49 21.629±0.72 28.397±37.46 55.150±34.88 8.693±1.48 12.927±1.79 7.799±0.67 1.061±0.62 10.168±3.52 182.061±65.65 8.857±3.09 0.804±0.77 0.541±0.19
ENSMUST00000187469 N/A N/A N/A 189.406±0.00 73.624±0.00 N/A N/A N/A N/A N/A N/A 3.476±2.03 0.221±0.14 0.147±0.00
ENSMUST00000188002 4.383±1.34 4.328±1.08 4.639±0.36 2.129±0.05 12.509±4.74 2.667±0.92 2.382±0.17 2.677±0.32 0.539±0.24 2.970±0.49 34.765±6.72 2.800±0.92 0.466±0.45 0.336±0.00

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