C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type I, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188002 Scn1b-004 ENSMUSG00000019194 10090 - 7:31116524-31126844 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000188002
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000188002 4.383±1.34 4.328±1.08 4.639±0.36 2.129±0.05 12.509±4.74 2.667±0.92 2.382±0.17 2.677±0.32 0.539±0.24 2.970±0.49 34.765±6.72 2.800±0.92 0.466±0.45 0.336±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VC CIL_0001VC_0002 CGP 7:31116524-31155896

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007411 IMP axon guidance
GO:0010976 IGI positive regulation of neuron projection development
GO:0014704 IDA intercalated disc
GO:0019227 IMP neuronal action potential propagation
GO:0019871 IMP sodium channel inhibitor activity
GO:0021966 IMP corticospinal neuron axon guidance
GO:0030315 IDA T-tubule
GO:0033268 IDA node of Ranvier
GO:0034706 IPI sodium channel complex
GO:0035725 IMP sodium ion transmembrane transport
GO:0040011 IMP locomotion
GO:0060307 IMP regulation of ventricular cardiac muscle cell membrane repolarization
GO:0061337 IMP cardiac conduction
GO:0086006 IMP voltage-gated sodium channel activity involved in cardiac muscle cell action potential
GO:0086012 IMP membrane depolarization during cardiac muscle cell action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262631 SCN1B-001 protein_coding Homo_sapiens 0 835
ENST00000415950 SCN1B-003 protein_coding Homo_sapiens 0 553
ENST00000595652 SCN1B-002 protein_coding Homo_sapiens 0 316
ENST00000596348 SCN1B-005 processed_transcript Homo_sapiens 0 669
ENST00000602150 SCN1B-004 retained_intron Homo_sapiens 0 198

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