C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | TAR DNA binding protein | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000188380  |
Tardbp-029 |
ENSMUSG00000041459 |
10090 | - |
4:148612388-148616138  |
processed_transcript |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008JY | CIL_0008JY_0002 | VISTA | 4:148408124-149009196 |
| CIL_0008JG | CIL_0008JG_0002 | VISTA | 4:148444314-149044861 |
| CIL_0008RU | CIL_0008RU_0002 | VISTA | 4:148508781-149109416 |
| CIL_0008S2 | CIL_0008S2_0002 | VISTA | 4:148555953-149160332 |
| CIL_00082Y | CIL_00082Y_0002 | VISTA | 4:148576108-149176659 |
| CIL_00085P | CIL_00085P_0002 | VISTA | 4:148597228-149198219 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000240185
|
TARDBP-001 | protein_coding | Homo_sapiens | 0 | 340 |
|
ENST00000400897
|
MASP2-001 | protein_coding | Homo_sapiens | 9e-22 | 110 |
|
ENST00000473869
|
TARDBP-002 | nonsense_mediated_decay | Homo_sapiens | 6e-33 | 147 |
|
ENST00000611136
|
TARDBP-002 | nonsense_mediated_decay | Homo_sapiens | 0 | 339 |
|
ENST00000612542
|
TARDBP-003 | protein_coding | Homo_sapiens | 0 | 510 |
|
ENST00000614757
|
TARDBP-001 | nonsense_mediated_decay | Homo_sapiens | 0 | 510 |
|
ENST00000620028
|
TARDBP-005 | processed_transcript | Homo_sapiens | 0 | 750 |
|
ENST00000622108
|
TARDBP-004 | nonsense_mediated_decay | Homo_sapiens | 0 | 409 |
